Pre_GI: BLASTN Hits

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Query: NC_016842:775368 Treponema pallidum subsp. pertenue str. SamoaD chromosome, complete

Start: 775368, End: 794921, Length: 19554

Host Lineage: Treponema pallidum; Treponema; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: This strain was isolated in Western Samoa in 1953. Treponema pallidum subsp. pertenue causes the chronic and disfiguring illness called yaws. The disease starts as a skin infection causing persistent ulcers and progresses to form tumor-like masses. This disease tends to infect children and is common in rural areas in Africa, Southeast Asia and equatorial South America.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_021184:2238500*2238500226036721868Desulfotomaculum gibsoniae DSM 7213, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_010741:775000*77500079478519786Treponema pallidum subsp. pallidum SS14, complete genome022120BLASTN svgBLASTP svg
NC_000919:77378477378479386920086Treponema pallidum subsp. pallidum str. Nichols, complete genome022120BLASTN svgBLASTP svg
NC_015714:768500*76850079153823039Treponema paraluiscuniculi Cuniculi A chromosome, complete genome021600BLASTN svgBLASTP svg