Pre_GI: BLASTN Hits

Some Help

Query: NC_016822:1781644 Shigella sonnei 53G, complete genome

Start: 1781644, End: 1803599, Length: 21956

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_013716:44082014408201443527827078Citrobacter rodentium ICC168, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013716:5201097*5201097527659975503Citrobacter rodentium ICC168, complete genome0775BLASTN svgBLASTP svg
NC_008253:15348401534840155611921280Escherichia coli 536, complete genome020340BLASTN svgBLASTP svg
CU928145:16847771684777170387419098Escherichia coli 55989 chromosome, complete genome021440BLASTN svgBLASTP svg
CU928145:39834323983432403268849257Escherichia coli 55989 chromosome, complete genome02413BLASTN svgBLASTP svg
NC_011748:39834323983432403268849257Escherichia coli 55989, complete genome02413BLASTN svgBLASTP svg
NC_011748:16847771684777170387419098Escherichia coli 55989, complete genome021440BLASTN svgBLASTP svg
NC_008563:16209431620943164109920157Escherichia coli APEC O1, complete genome020240BLASTN svgBLASTP svg
NC_010468:23457812345781237145925679Escherichia coli ATCC 8739, complete genome021440BLASTN svgBLASTP svg
NC_004431:17546271754627177809923473Escherichia coli CFT073, complete genome026380BLASTN svgBLASTP svg
NC_004431:3409389*3409389349493685548Escherichia coli CFT073, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_004431:35131473513147354268029534Escherichia coli CFT073, complete genome02742BLASTN svgBLASTP svg
NC_009801:16787901678790170320124412Escherichia coli E24377A, complete genome027960BLASTN svgBLASTP svg
NC_009800:3685651*3685651370909923449Escherichia coli HS, complete genome02454BLASTN svgBLASTP svg
NC_009800:15890001589000161490825909Escherichia coli HS, complete genome021510BLASTN svgBLASTP svg
CU928160:15793751579375160831928945Escherichia coli IAI1 chromosome, complete genome021520BLASTN svgBLASTP svg
NC_011750:18495611849561187012520565Escherichia coli IAI39 chromosome, complete genome020560BLASTN svgBLASTP svg
NC_000913:15704311570431159611025680Escherichia coli K12, complete genome021390BLASTN svgBLASTP svg
NC_000913:3624826*3624826366560340778Escherichia coli K12, complete genome02420BLASTN svgBLASTP svg
NC_000913:44947734494773451470019928Escherichia coli K12, complete genome02748BLASTN svgBLASTP svg
CP002516:23955782395578241927123694Escherichia coli KO11, complete genome011450BLASTN svgBLASTP svg
CP002797:15910001591000160930018301Escherichia coli NA114, complete genome05448BLASTN svgBLASTP svg
CP002797:47757804775780479609920320Escherichia coli NA114, complete genome2e-1695.6BLASTN svgBLASTP svg
AP010958:17116561711656173552123866Escherichia coli O103:H2 str. 12009 DNA, complete genome027780BLASTN svgBLASTP svg
AP010958:43134624313462433479021329Escherichia coli O103:H2 str. 12009 DNA, complete genome02428BLASTN svgBLASTP svg
NC_002655:19664641966464198957123108Escherichia coli O157:H7 EDL933, complete genome011100BLASTN svgBLASTP svg
NC_002695:20918902091890211359921710Escherichia coli O157:H7 str. Sakai, complete genome024050BLASTN svgBLASTP svg
NC_010498:16593281659328168149222165Escherichia coli SMS-3-5, complete genome023670BLASTN svgBLASTP svg
NC_010473:4596500*4596500461806621567Escherichia coli str. K-12 substr. DH10B, complete genome02748BLASTN svgBLASTP svg
NC_010473:16610001661000168573524736Escherichia coli str. K-12 substr. DH10B, complete genome021440BLASTN svgBLASTP svg
NC_011751:17703761770376179379823423Escherichia coli UMN026 chromosome, complete genome020470BLASTN svgBLASTP svg
NC_011751:49925004992500501338720888Escherichia coli UMN026 chromosome, complete genome02748BLASTN svgBLASTP svg
NC_011751:34536833453683351238358701Escherichia coli UMN026 chromosome, complete genome8e-19103BLASTN svgBLASTP svg
NC_007946:16320251632025165817126147Escherichia coli UTI89, complete genome020240BLASTN svgBLASTP svg
CP002185:16813271681327171027728951Escherichia coli W, complete genome021550BLASTN svgBLASTP svg
AC_000091:4501430*4501430452291521486Escherichia coli W3110 DNA, complete genome02748BLASTN svgBLASTP svg
AC_000091:15740001574000159980025801Escherichia coli W3110 DNA, complete genome021600BLASTN svgBLASTP svg
NC_011740:15953811595381161679021410Escherichia fergusonii ATCC 35469, complete genome01717BLASTN svgBLASTP svg
NC_011740:28599332859933288499725065Escherichia fergusonii ATCC 35469, complete genome01168BLASTN svgBLASTP svg
NC_014394:2228470*2228470225229223823Gallionella capsiferriformans ES-2 chromosome, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_005126:27569842756984277869021707Photorhabdus luminescens subsp. laumondii TTO1, complete genome6e-35157BLASTN svgBLASTP svg
NC_004129:43333024333302435159918298Pseudomonas fluorescens Pf-5, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010067:1300606*1300606132180421199Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete7e-1383.8BLASTN svgBLASTP svg
NC_010658:36226103622610364133018721Shigella boydii CDC 3083-94, complete genome6e-180638BLASTN svgBLASTP svg
NC_010658:15931371593137161115518019Shigella boydii CDC 3083-94, complete genome021450BLASTN svgBLASTP svg
NC_007613:41197714119771413859918829Shigella boydii Sb227, complete genome02537BLASTN svgBLASTP svg
NC_007613:15330241533024155939726374Shigella boydii Sb227, complete genome028240BLASTN svgBLASTP svg
NC_007606:15154031515403153810522703Shigella dysenteriae Sd197, complete genome05812BLASTN svgBLASTP svg
NC_004741:41320564132056415578223727Shigella flexneri 2a str. 2457T, complete genome02744BLASTN svgBLASTP svg
NC_004741:24562972456297247959923303Shigella flexneri 2a str. 2457T, complete genome01150BLASTN svgBLASTP svg
NC_004741:17924421792442181107618635Shigella flexneri 2a str. 2457T, complete genome014150BLASTN svgBLASTP svg
NC_004851:15767515767518009922425Shigella flexneri 2a str. 301 plasmid pCP301, complete sequence3e-49204BLASTN svgBLASTP svg
NC_004337:36219853621985364626824284Shigella flexneri 2a str. 301, complete genome02740BLASTN svgBLASTP svg
NC_004337:24784612478461250482826368Shigella flexneri 2a str. 301, complete genome01150BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome02757BLASTN svgBLASTP svg
NC_008258:17509641750964177411123148Shigella flexneri 5 str. 8401, complete genome09951BLASTN svgBLASTP svg
NC_008258:26980626980629518525380Shigella flexneri 5 str. 8401, complete genome02755BLASTN svgBLASTP svg
NC_007384:25878762587876261159923724Shigella sonnei Ss046, complete genome02652BLASTN svgBLASTP svg
NC_007384:40950164095016412229027275Shigella sonnei Ss046, complete genome02781BLASTN svgBLASTP svg
NC_007384:16968311696831171856121731Shigella sonnei Ss046, complete genome011960BLASTN svgBLASTP svg
NC_015224:3892972*3892972393636443393Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,1e-57232BLASTN svgBLASTP svg