Pre_GI: BLASTP Hits

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Query: NC_016822:3923908:3929197 Shigella sonnei 53G, complete genome

Start: 3929197, End: 3930819, Length: 1623

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007384:3897000:3902369390236939039911623Shigella sonnei Ss046, complete genomehypothetical protein01101
NC_017328:3625000:3630329363032936319511623Shigella flexneri 2002017 chromosome, complete genomehypothetical protein01080
NC_004337:3590323:3595612359561235972341623Shigella flexneri 2a str. 301, complete genomehypothetical protein01080
NC_004741:4160500:4176769417676941783911623Shigella flexneri 2a str. 2457T, complete genomehypothetical protein01080
NC_008258:3550500:3556023355602335576451623Shigella flexneri 5 str. 8401, complete genomehypothetical protein01077
NC_000913:3624826:3628991362899136306131623Escherichia coli K12, complete genomehypothetical protein01070
AC_000091:3995233:4007825400782540094471623Escherichia coli W3110 DNA, complete genomehypothetical protein01070
NC_010473:3722571:3726736372673637283581623Escherichia coli str. K-12 substr. DH10B, complete genomehypothetical protein01070
NC_012947:248000:2778982778982795201623Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein01065
NC_012967:3549880:3561656356165635632781623Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein01065
NC_013941:4249871:4254036425403642556581623Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein01061
CP002185:3822470:3826635382663538282571623Escherichia coli W, complete genomeconserved hypothetical protein01060
NC_011751:4074586:4078751407875140803731623Escherichia coli UMN026 chromosome, complete genomehypothetical protein01046
NC_010498:3838419:3842584384258438442061623Escherichia coli SMS-3-5, complete genomehypothetical protein01038
NC_011748:3958572:3962737396273739640891353Escherichia coli 55989, complete genome0915
CU928145:3958572:3962737396273739640891353Escherichia coli 55989 chromosome, complete genomefragment of conserved hypothetical protein (part 2)0915
NC_007613:3470314:3475777347577734767901014Shigella boydii Sb227, complete genomehypothetical protein0636
CP002185:3822470:3828519382851938301081590Escherichia coli W, complete genome2e-62240
NC_012947:248000:2760292760292776361608Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein1e-61237
NC_012967:3549880:3563540356354035651471608Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein1e-61237
NC_013941:4249871:4255920425592042575931674Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein8e-59228
NC_010498:3838419:3844468384446838461201653Escherichia coli SMS-3-5, complete genomehypothetical protein2e-57224
NC_011751:4074586:4080635408063540823081674Escherichia coli UMN026 chromosome, complete genomehypothetical protein4e-57223
NC_016822:3923908:3931081393108139326881608Shigella sonnei 53G, complete genomehypothetical protein7e-57221
NC_007384:3897000:3904253390425339058601608Shigella sonnei Ss046, complete genomehypothetical protein7e-57221
NC_017328:3625000:3632213363221336339161704Shigella flexneri 2002017 chromosome, complete genomehypothetical protein3e-55216
NC_004337:3590323:3597496359749635992711776Shigella flexneri 2a str. 301, complete genomehypothetical protein3e-55216
NC_008258:3550500:3557907355790735596821776Shigella flexneri 5 str. 8401, complete genomehypothetical protein1e-54214
NC_007613:3470314:3477052347705234780651014Shigella boydii Sb227, complete genomehypothetical protein2e-51204
NC_000913:3624826:3631243363124336324811239Escherichia coli K12, complete genomehypothetical protein5e-47189
AC_000091:3995233:4005957400595740071951239Escherichia coli W3110 DNA, complete genomehypothetical protein5e-47189
NC_010473:3722571:3728620372862037302261607Escherichia coli str. K-12 substr. DH10B, complete genome1e-46188
NC_004741:4160500:4174918417491841761081191Shigella flexneri 2a str. 2457T, complete genome3e-42173
CU928145:3958572:3965159396515939662441086Escherichia coli 55989 chromosome, complete genomefragment of conserved hypothetical protein (part 1)5e-35149
NC_011748:3958572:3965159396515939662441086Escherichia coli 55989, complete genome5e-35149
NC_011748:3958572:396416439641643964358195Escherichia coli 55989, complete genome2e-1894.7
CU928145:3958572:396416439641643964358195Escherichia coli 55989 chromosome, complete genomefragment of conserved hypothetical protein (part 1)2e-1894.7