Pre_GI: BLASTP Hits

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Query: NC_016822:3923908:3923908 Shigella sonnei 53G, complete genome

Start: 3923908, End: 3925032, Length: 1125

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007384:3897000:3897080389708038982071128Shigella sonnei Ss046, complete genomeputative transporter0682
NC_007613:3470314:3469190346919034703171128Shigella boydii Sb227, complete genomeputative transporter0680
NC_017328:3625000:3625040362504036261671128Shigella flexneri 2002017 chromosome, complete genomeABC transporter ATP-binding protein0680
NC_004337:3590323:3590323359032335914471125Shigella flexneri 2a str. 301, complete genomeputative transporter0680
AC_000091:3995233:4013612401361240147361125Escherichia coli W3110 DNA, complete genomepredicted transporter subunit0680
NC_004741:4160500:4182556418255641836801125Shigella flexneri 2a str. 2457T, complete genomeputative transporter0680
NC_008258:3550500:3550734355073435518581125Shigella flexneri 5 str. 8401, complete genomeputative transporter0680
NC_012947:248000:2836852836852848091125Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeABC transporter0680
NC_012967:3549880:3556367355636735574911125Escherichia coli B str. REL606 chromosome, complete genomeputative transporter subunit membrane component of ABC superfamily0680
NC_013941:4249871:4248747424874742498741128Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein0678
NC_018697:618832:6301156301156312361122Cycloclasticus sp. P1 chromosome, complete genomeABC transporter, ATP-binding protein, permease1e-126453
NC_012691:2614603:2694808269480826959381131Tolumonas auensis DSM 9187, complete genomeABC-2 type transporter2e-126452
NC_010814:3673983:3673983367398336751041122Geobacter lovleyi SZ, complete genomeABC-2 type transporter6e-124444
NC_020541:2264521:2269132226913222702621131Rhodanobacter sp. 2APBS1, complete genomeABC-type multidrug transport system, permease component2e-116419
NC_016803:2431672:2464915246491524660541140Desulfovibrio desulfuricans ND132 chromosome, complete genomeABC transporter7e-110397
NC_016830:3869572:3897288389728838984031116Pseudomonas fluorescens F113 chromosome, complete genomemultidrug ABC transporter permease2e-108392
NC_014315:2834000:2843866284386628449901125Nitrosococcus watsoni C-113 chromosome, complete genomeABC-2 type transporter2e-76286
NC_017059:747624:761225761225761869645Rhodospirillum photometricum DSM 122, complete genomeInner membrane transport permease YhhJ,putative6e-59228
NC_011296:1542835:1557198155719815583221125Thermodesulfovibrio yellowstonii DSM 11347, complete genomeABC-2 type transporter4e-46185
NC_017059:747624:761836761836762372537Rhodospirillum photometricum DSM 122, complete genomeInner membrane transport permease YhhJ,putative5e-41168
NC_017098:1149145:1157512115751211587171206Spirochaeta africana DSM 8902 chromosome, complete genomemultidrug ABC transporter permease1e-31137
NC_014364:3707311:3709170370917037102791110Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeABC-2 type transporter4e-29129
NC_014926:819163:8245538245538256381086Thermovibrio ammonificans HB-1 chromosome, complete genomeABC-2 type transporter6e-27121
NC_011883:1601552:1608075160807516092111137Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,ABC-2 type transporter3e-26119
NC_016629:415711:4284654284654295831119Desulfovibrio africanus str. Walvis Bay chromosome, completeABC-2 type transporter5e-25115
NC_007759:2858240:2861146286114628623481203Syntrophus aciditrophicus SB, complete genomeexport ABC transporter permease protein4e-25115
NC_002939:3108907:3110043311004331111731131Geobacter sulfurreducens PCA, complete genomehypothetical protein1e-24114
NC_019940:1837863:1851686185168618527951110Thioflavicoccus mobilis 8321 chromosome, complete genomemultidrug ABC transporter permease2e-24113
NC_010655:1606901:1644002164400216451141113Akkermansia muciniphila ATCC BAA-835, complete genomeABC-2 type transporter3e-24112
NC_015942:2213710:2217587221758722186961110Acidithiobacillus ferrivorans SS3 chromosome, complete genomeABC-2 type transporter4e-24112
NC_015850:1060000:1074695107469510758041110Acidithiobacillus caldus SM-1 chromosome, complete genomeABC-2 type transporter4e-23109
NC_015856:2646816:2649594264959426507451152Collimonas fungivorans Ter331 chromosome, complete genomemultidrug ABC transporter permease3e-23109
NC_014924:3334386:3335339333533933364331095Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomeABC-2 type transporter1e-22107
NC_011761:2546081:2548971254897125500801110Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completeABC transporter permease5e-2099
NC_011206:2447905:2450795245079524519041110Acidithiobacillus ferrooxidans ATCC 53993, complete genomeABC-2 type transporter5e-2099
NC_013850:109500:1206921206921218311140Klebsiella variicola At-22 chromosome, complete genomeABC-2 type transporter9e-2098.2
NC_007973:1821753:1821753182175318245122760Ralstonia metallidurans CH34 chromosome 1, complete sequenceresponse regulator receiver domain protein (CheY-like)2e-1997.1
NC_011283:105245:1154961154961166351140Klebsiella pneumoniae 342 chromosome, complete genomeABC transporter permease2e-1996.7
NC_014926:819163:8234508234508245561107Thermovibrio ammonificans HB-1 chromosome, complete genomeABC-2 type transporter2e-1894
NC_017098:1149145:1156365115636511575191155Spirochaeta africana DSM 8902 chromosome, complete genomemultidrug ABC transporter permease2e-1893.6
NC_016845:5162481:5167756516775651688501095Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative ABC-type multidrug transport system, permease component2e-1893.2
NC_012731:5074000:5080056508005650811951140Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeputative ABC-type multidrug transport system permease component3e-1893.2
NC_009648:4359875:4365877436587743670161140Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative ABC-type multidrug transport system, permease component3e-1893.2
NC_014166:1179335:1196261119626111973431083Arcobacter nitrofigilis DSM 7299 chromosome, complete genomeABC transporter6e-1892
NC_018697:618832:6273226273226301112790Cycloclasticus sp. P1 chromosome, complete genomeABC transporter, ATP-binding protein/permease6e-1892
NC_015501:556994:5736525736525747671116Porphyromonas asaccharolytica DSM 20707 chromosome, completeABC-2 type transporter8e-1891.7
NC_002939:3108907:3108907310890731100401134Geobacter sulfurreducens PCA, complete genomehypothetical protein1e-1790.9
NC_014364:3707311:3708063370806337091661104Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeABC-2 type transporter2e-1790.5
NC_007404:1126756:1142066114206611432021137Thiobacillus denitrificans ATCC 25259, complete genomeABC-2 type transport system permease protein2e-1790.1
NC_009665:1831674:1831674183167418327951122Shewanella baltica OS185 chromosome, complete genomeABC-2 type transporter2e-1790.1
NC_013941:4249871:4249871424987142526062736Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeABC transporter ATP-binding protein7e-1788.6
NC_009454:1577319:1577319157731915784281110Pelotomaculum thermopropionicum SI, complete genomeABC-type multidrug transport system, permease component6e-1788.6
NC_011751:4074586:4074586407458640773212736Escherichia coli UMN026 chromosome, complete genomefused ribosome-associated ATPase/membrane protein8e-1788.2
NC_011027:1153592:1157948115794811590571110Chlorobaculum parvum NCIB 8327, complete genomeABC-2 type transporter9e-1788.2
NC_004741:4160500:4179821417982141825562736Shigella flexneri 2a str. 2457T, complete genomeputative ATP-binding component of a transport system1e-1687.4
NC_004337:3590323:3591447359144735941822736Shigella flexneri 2a str. 301, complete genomeputative ATP-binding component of a transport system1e-1687.4
NC_017328:3625000:3626164362616436288992736Shigella flexneri 2002017 chromosome, complete genomeATPase2e-1687.4
NC_016822:3923908:3925032392503239277672736Shigella sonnei 53G, complete genomeribosome-associated ATPase2e-1687.4
NC_007384:3897000:3898204389820439008882685Shigella sonnei Ss046, complete genomeputative ATP-binding component of a transport system, fragment 12e-1687.4
NC_008258:3550500:3551858355185835545932736Shigella flexneri 5 str. 8401, complete genomeHypothetical ABC transporter ATP-binding protein yhiH2e-1687.4
NC_010498:3838419:3838419383841938411542736Escherichia coli SMS-3-5, complete genomeABC transporter, ATP binding protein1e-1687.4
CP002185:3822470:3822470382247038252052736Escherichia coli W, complete genomefused ribosome-associated ATPase: ATP-binding protein/ATP-binding protein/predicted membrane protein1e-1687.4
CU928145:3958572:3958572395857239613072736Escherichia coli 55989 chromosome, complete genomefused ribosome-associated ATPase: ATP-binding protein ; ATP-binding protein ; putative membrane protein1e-1687.4
NC_011748:3958572:3958572395857239613072736Escherichia coli 55989, complete genomefused ribosome-associated ATPase: ATP-binding protein ; ATP-binding protein ; putative membrane protein1e-1687.4
NC_010473:3722571:3722571372257137253062736Escherichia coli str. K-12 substr. DH10B, complete genomefused ribosome-associated ATPase: ATP-binding protein; ATP-binding protein; predicted membrane protein1e-1687.4
NC_000913:3624826:3624826362482636275612736Escherichia coli K12, complete genomefused ribosome-associated ATPase: ATP-binding protein/ATP-binding protein/predicted membrane protein1e-1687.4
AC_000091:3995233:4010877401087740136122736Escherichia coli W3110 DNA, complete genomefused ribosome-associated ATPases1e-1687.4
NC_012947:248000:2809502809502836852736Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeABC transporter1e-1687.4
NC_012967:3549880:3557491355749135602262736Escherichia coli B str. REL606 chromosome, complete genomeribosome-associated ATPase1e-1687.4
NC_016830:3869572:3894549389454938972872739Pseudomonas fluorescens F113 chromosome, complete genomemultidrug ABC transporter permease2e-1687
NC_007613:3470314:3470314347031434729982685Shigella boydii Sb227, complete genomeputative ATP-binding component of a transport system, fragment 12e-1687
NC_011296:1542835:1558319155831915594521134Thermodesulfovibrio yellowstonii DSM 11347, complete genomeATPase component ABC-type multidrug transport system4e-1685.9
NC_010814:3673983:3675105367510536778942790Geobacter lovleyi SZ, complete genomeABC transporter related4e-1685.9
NC_013960:2761353:2778010277801027791071098Nitrosococcus halophilus Nc4 chromosome, complete genomeABC-2 type transporter6e-1685.5
NC_014831:866614:8740668740668753731308Thermaerobacter marianensis DSM 12885 chromosome, complete genomeABC-2 type transporter6e-1685.5
NC_012691:2614603:2692038269203826948062769Tolumonas auensis DSM 9187, complete genomeABC transporter related8e-1685.1
NC_011027:1153592:1159054115905411602111158Chlorobaculum parvum NCIB 8327, complete genomeABC-2 type transporter2e-1584
NC_020541:2264521:2266400226640022691352736Rhodanobacter sp. 2APBS1, complete genomeABC-type multidrug transport system, ATPase component2e-1584
NC_015501:556994:5747935747935759291137Porphyromonas asaccharolytica DSM 20707 chromosome, completeABC-2 type transporter6e-1582
NC_010995:4297361:4317944431794443190591116Cellvibrio japonicus Ueda107, complete genomeABC-type multidrug transport system, permease component7e-1582
NC_014215:142500:1624531624531636521200Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1,ABC transporter, permease protein4e-1479.3
NC_007759:2858240:2860098286009828612071110Syntrophus aciditrophicus SB, complete genomeexport ABC transporter permease protein2e-1377
NC_014315:1435243:1450417145041714515141098Nitrosococcus watsoni C-113 chromosome, complete genomeABC-2 type transporter3e-1376.3
NC_013385:1007616:1007616100761610087911176Ammonifex degensii KC4, complete genomeABC-2 type transporter8e-1375.1
NC_010655:1606901:1645119164511916462251107Akkermansia muciniphila ATCC BAA-835, complete genomeABC-2 type transporter2e-1273.9
NC_017059:747624:7623447623447651632820Rhodospirillum photometricum DSM 122, complete genomeABC transporter ATP-binding protein2e-1273.9
NC_013520:1559000:1559626155962615607411116Veillonella parvula DSM 2008, complete genomeABC-2 type transporter2e-1273.6
NC_014315:1435243:1451522145152214526791158Nitrosococcus watsoni C-113 chromosome, complete genomeABC-2 type transporter4e-1272.8
NC_016745:3170384:3188836318883631899301095Oceanimonas sp. GK1 chromosome, complete genomemultidrug ABC transporter permease2e-1170.1
NC_019940:1837863:1850550185055018516861137Thioflavicoccus mobilis 8321 chromosome, complete genomemultidrug ABC transporter permease7e-1168.6
NC_014910:2930860:2950124295012429512931170Alicycliphilus denitrificans BC chromosome, complete genomeabc-2 type transporter1e-1067.8
NC_013960:2761353:2779115277911527802721158Nitrosococcus halophilus Nc4 chromosome, complete genomeABC-2 type transporter1e-1067.8
NC_011761:2546081:2547856254785625489711116Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completeABC transporter permease2e-1067
NC_011206:2447905:2449680244968024507951116Acidithiobacillus ferrooxidans ATCC 53993, complete genomeABC-2 type transporter2e-1067
NC_015942:2213710:2216472221647222175871116Acidithiobacillus ferrivorans SS3 chromosome, complete genomeABC-2 type transporter3e-1066.2
NC_013520:1559000:1560741156074115618531113Veillonella parvula DSM 2008, complete genomeABC-2 type transporter3e-0963.2
NC_009253:3317533:3323384332338433245141131Desulfotomaculum reducens MI-1 chromosome, complete genomeABC-2 type transporter2e-0860.1
NC_015850:1060000:1075804107580410769191116Acidithiobacillus caldus SM-1 chromosome, complete genomeABC-2 type transporter4e-0859.3
NC_009253:3317533:3324528332452833257211194Desulfotomaculum reducens MI-1 chromosome, complete genomeABC-2 type transporter2e-0757
NC_015574:2322811:2341886234188623430701185Methanobacterium sp. SWAN-1 chromosome, complete genomeABC-2 type transporter3e-0756.6
NC_016629:415711:4295864295864307341149Desulfovibrio africanus str. Walvis Bay chromosome, completeABC-2 type transporter3e-0756.2
NC_014166:1179335:1197340119734011984491110Arcobacter nitrofigilis DSM 7299 chromosome, complete genomeABC transporter1e-0654.7