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Query: NC_016822:3065426:3089349 Shigella sonnei 53G, complete genome

Start: 3089349, End: 3089873, Length: 525

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007384:2933625:295718529571852957709525Shigella sonnei Ss046, complete genomehypothetical protein5e-88322
NC_013364:3339768:336113433611343361658525Escherichia coli O111:H- str. 11128, complete genomeputative inner membrane protein1e-87321
NC_013361:3651150:367596036759603676484525Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein1e-87321
NC_013353:3238742:326004532600453260569525Escherichia coli O103:H2 str. 12009, complete genomeinner membrane protein1e-87321
AP010958:3238742:326004532600453260569525Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted inner membrane protein1e-87321
NC_011750:2928990:296505629650562965580525Escherichia coli IAI39 chromosome, complete genomehypothetical protein1e-87321
CU928160:2818750:284242928424292842953525Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein; putative inner membrane protein with hydrolase activity3e-87320
NC_011741:2818750:284242928424292842953525Escherichia coli IAI1 chromosome, complete genomehypothetical protein3e-87320
NC_011742:2863316:288471728847172885241525Escherichia coli S88 chromosome, complete genomehypothetical protein7e-87318
NC_011601:2998326:302338330233833023907525Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeinner membrane protein with hydrolase activity9e-87318
NC_012967:2669182:269227326922732692797525Escherichia coli B str. REL606 chromosome, complete genomeputative inner membrane protein with hydrolase activity1e-86318
NC_000913:2746886:279554227955422796066525Escherichia coli K12, complete genomepredicted inner membrane protein with hydrolase activity3e-86317
CP002185:2919752:294363529436352944159525Escherichia coli W, complete genomepredicted inner membrane protein with hydrolase activity3e-86317
NC_010473:2839902:288730728873072887831525Escherichia coli str. K-12 substr. DH10B, complete genomepredicted inner membrane protein with hydrolase activity3e-86317
AC_000091:2747520:279617627961762796700525Escherichia coli W3110 DNA, complete genomepredicted inner membrane protein with hydrolase activity3e-86317
NC_012759:2633949:268135426813542681878525Escherichia coli BW2952 chromosome, complete genomeputative inner membrane protein with hydrolase activity3e-86317
NC_010498:2847359:287113528711352871659525Escherichia coli SMS-3-5, complete genomeputative inner membrane protein8e-86315
NC_012779:2664849:267831226783122678842531Edwardsiella ictaluri 93-146, complete genomeinner membrane protein YgaP7e-45179
NC_012917:1840172:184531618453161845852537Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeRhodanese domain protein2e-44177
NC_014842:19411:350393503935566528Pantoea sp. At-9b plasmid pPAT9B05, complete sequenceRhodanese domain-containing protein4e-43173
NC_013421:3117639:313087331308733131409537Pectobacterium wasabiae WPP163, complete genomeRhodanese domain protein1e-42172
NC_015061:3725921:373559537355953736125531Rahnella sp. Y9602 chromosome, complete genomeRhodanese domain protein5e-42170
NC_017047:3793000:380025638002563800786531Rahnella aquatilis HX2 chromosome, complete genomerhodanese domain-containing protein5e-42170
NC_013282:1256769:125676912567691257338570Cronobacter turicensis, complete genomeInner membrane protein ygaP7e-36149
NC_020260:2725201:272520127252012725737537Cronobacter sakazakii Sp291, complete genomeInner membrane protein YgaP2e-34144
NC_013720:545829:565982565982566902921Pirellula staleyi DSM 6068, complete genomeRhodanese domain protein7e-1476.6
NC_004369:41236:584065840659065660Corynebacterium efficiens YS-314, complete genomehypothetical protein1e-0962.8
NC_007626:2354260:235532523553252355693369Magnetospirillum magneticum AMB-1, complete genomeRhodanese-related sulfurtransferase1e-0755.8
NC_011979:537862:559561559561559938378Geobacter sp. FRC-32, complete genomeRhodanese domain protein2e-0755.5
NC_014733:107394:112664112664113029366Methylovorus sp. MP688 chromosome, complete genomerhodanese domain protein6e-0753.5