Query: NC_016810:3993863 Salmonella enterica subsp. enterica serovar Typhimurium str
Start: 3993863, End: 4016099, Length: 22237
Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria
General Information: This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_003197:3971905 | 3971905 | 3994511 | 22607 | Salmonella typhimurium LT2, complete genome | 0 | 42910 | BLASTN svg | BLASTP svg |
NC_011083:3985618 | 3985618 | 4008720 | 23103 | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476, | 0 | 42790 | BLASTN svg | BLASTP svg |
NC_011149:3895921 | 3895921 | 3918099 | 22179 | Salmonella enterica subsp. enterica serovar Agona str. SL483, | 0 | 39400 | BLASTN svg | BLASTP svg |
NC_010102:3919999 | 3919999 | 3942684 | 22686 | Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7, | 0 | 34990 | BLASTN svg | BLASTP svg |
NC_006511:3759550 | 3759550 | 3782721 | 23172 | Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC | 0 | 34710 | BLASTN svg | BLASTP svg |
NC_004631:3841975 | 3841975 | 3864632 | 22658 | Salmonella enterica subsp. enterica serovar Typhi Ty2, complete | 0 | 34540 | BLASTN svg | BLASTP svg |
NC_003198:3855157 | 3855157 | 3879142 | 23986 | Salmonella enterica subsp. enterica serovar Typhi str. CT18, | 0 | 34540 | BLASTN svg | BLASTP svg |
NC_011080:3941909 | 3941909 | 3964144 | 22236 | Salmonella enterica subsp. enterica serovar Newport str. SL254, | 0 | 26370 | BLASTN svg | BLASTP svg |
NC_006905:3913988 | 3913988 | 3931898 | 17911 | Salmonella enterica subsp. enterica serovar Choleraesuis str | 0 | 23850 | BLASTN svg | BLASTP svg |
NC_021066:4177217* | 4177217 | 4195649 | 18433 | Raoultella ornithinolytica B6, complete genome | 0 | 2204 | BLASTN svg | BLASTP svg |
NC_009792:4693152 | 4693152 | 4719999 | 26848 | Citrobacter koseri ATCC BAA-895, complete genome | 0 | 2161 | BLASTN svg | BLASTP svg |
NC_004337:3590323* | 3590323 | 3952993 | 362671 | Shigella flexneri 2a str. 301, complete genome | 0 | 1857 | BLASTN svg | BLASTP svg |
NC_002695:4584177 | 4584177 | 4635759 | 51583 | Escherichia coli O157:H7 str. Sakai, complete genome | 0 | 1852 | BLASTN svg | BLASTP svg |
NC_004431:279868 | 279868 | 322295 | 42428 | Escherichia coli CFT073, complete genome | 0 | 1334 | BLASTN svg | BLASTP svg |
NC_011750:4390000 | 4390000 | 4442759 | 52760 | Escherichia coli IAI39 chromosome, complete genome | 0 | 1257 | BLASTN svg | BLASTP svg |
NC_008253:3122148* | 3122148 | 3159232 | 37085 | Escherichia coli 536, complete genome | 0 | 1253 | BLASTN svg | BLASTP svg |
CP002797:4603787* | 4603787 | 4643407 | 39621 | Escherichia coli NA114, complete genome | 0 | 1217 | BLASTN svg | BLASTP svg |
NC_002655:4653160 | 4653160 | 4703282 | 50123 | Escherichia coli O157:H7 EDL933, complete genome | 0 | 1189 | BLASTN svg | BLASTP svg |
NC_013716:4306695* | 4306695 | 4398274 | 91580 | Citrobacter rodentium ICC168, complete genome | 0 | 805 | BLASTN svg | BLASTP svg |
CP002185:4035502* | 4035502 | 4064099 | 28598 | Escherichia coli W, complete genome | 2e-109 | 404 | BLASTN svg | BLASTP svg |
NC_020064:79422* | 79422 | 125241 | 45820 | Serratia marcescens FGI94, complete genome | 3e-52 | 214 | BLASTN svg | BLASTP svg |
NC_013282:2026083 | 2026083 | 2080198 | 54116 | Cronobacter turicensis, complete genome | 4e-33 | 151 | BLASTN svg | BLASTP svg |
NC_012779:3652737 | 3652737 | 3676099 | 23363 | Edwardsiella ictaluri 93-146, complete genome | 6e-32 | 147 | BLASTN svg | BLASTP svg |
NC_020260:1993344 | 1993344 | 2017860 | 24517 | Cronobacter sakazakii Sp291, complete genome | 8e-22 | 113 | BLASTN svg | BLASTP svg |
NC_012912:4167429 | 4167429 | 4185101 | 17673 | Dickeya zeae Ech1591, complete genome | 3e-21 | 111 | BLASTN svg | BLASTP svg |
NC_009778:1956225 | 1956225 | 1982551 | 26327 | Enterobacter sakazakii ATCC BAA-894, complete genome | 3e-21 | 111 | BLASTN svg | BLASTP svg |
NC_014562:3985500* | 3985500 | 4003170 | 17671 | Pantoea vagans C9-1 chromosome, complete genome | 1e-14 | 89.7 | BLASTN svg | BLASTP svg |
NC_015224:3587500 | 3587500 | 3617679 | 30180 | Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome, | 2e-13 | 85.7 | BLASTN svg | BLASTP svg |
NC_014837:1144500* | 1144500 | 1173825 | 29326 | Pantoea sp. At-9b chromosome, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_021064:1789980* | 1789980 | 1812326 | 22347 | Propionibacterium avidum 44067, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |