Pre_GI: BLASTN Hits

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Query: NC_016582:9050528 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 9050528, End: 9070250, Length: 19723

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_008278:61332961332963495421626Frankia alni ACN14a, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_009077:4671417*4671417469950728091Mycobacterium sp. JLS, complete genome1e-41178BLASTN svgBLASTP svg
NC_020126:55586135558613560639247780Myxococcus stipitatus DSM 14675, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_020126:3383902*3383902342138737486Myxococcus stipitatus DSM 14675, complete genome9e-0660BLASTN svgBLASTP svg
NC_014210:5309121*5309121533359924479Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,3e-27131BLASTN svgBLASTP svg
NC_002947:48050604805060483118826129Pseudomonas putida KT2440, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_007005:2191500*2191500223078139282Pseudomonas syringae pv. syringae B728a, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_003888:5790104*5790104582064330540Streptomyces coelicolor A3(2), complete genome1e-1489.7BLASTN svgBLASTP svg
NC_003888:85699628569962858809918138Streptomyces coelicolor A3(2), complete genome0676BLASTN svgBLASTP svg
NC_003888:6470909*6470909649144220534Streptomyces coelicolor A3(2), complete genome1e-103385BLASTN svgBLASTP svg
NC_003888:5114147*5114147515215738011Streptomyces coelicolor A3(2), complete genome7e-93349BLASTN svgBLASTP svg
NC_010572:84939468493946855999966054Streptomyces griseus subsp. griseus NBRC 13350, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_010572:113201832018Streptomyces griseus subsp. griseus NBRC 13350, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_015957:75330007533000755153218533Streptomyces violaceusniger Tu 4113 chromosome, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_015957:51365005136500515422817729Streptomyces violaceusniger Tu 4113 chromosome, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_013510:262888*26288828309920212Thermomonospora curvata DSM 43183, complete genome9e-0660BLASTN svgBLASTP svg