Pre_GI: BLASTN Hits

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Query: NC_016582:4874500 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 4874500, End: 4907654, Length: 33155

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_013093:1036772*1036772108759950828Actinosynnema mirum DSM 43827, complete genome01429BLASTN svgBLASTP svg
NC_008340:2034810*2034810206790533096Alkalilimnicola ehrlichei MLHE-1, complete genome7e-1177.8BLASTN svgBLASTP svg
NC_013862:27991279915399926009Allochromatium vinosum DSM 180 plasmid pALVIN02, complete sequence2e-1799.6BLASTN svgBLASTP svg
NC_011138:3182807*3182807321165528849Alteromonas macleodii 'Deep ecotype', complete genome4e-0661.9BLASTN svgBLASTP svg
NC_008702:111506115061Azoarcus sp. BH72, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_010831:78850078850081048421985Chlorobium phaeobacteroides BS1, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_014376:869749*86974989064520897Clostridium saccharolyticum WM1 chromosome, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_014958:629459*62945965461225154Deinococcus maricopensis DSM 21211 chromosome, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_015589:870804*87080488987819075Desulfotomaculum ruminis DSM 2154 chromosome, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_014973:34521003452100349125939160Geobacter sp. M18 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008789:1237969*1237969126209924131Halorhodospira halophila SL1, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_013169:23514752351475238021528741Kytococcus sedentarius DSM 20547, complete genome1e-18103BLASTN svgBLASTP svg
NC_012559:18880001888000191471626717Laribacter hongkongensis HLHK9, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_006087:676318*67631869499818681Leifsonia xyli subsp. xyli str. CTCB07, complete genome4e-1281.8BLASTN svgBLASTP svg
NC_011666:1661491*1661491168514023650Methylocella silvestris BL2, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014391:621062*62106264468923628Micromonospora aurantiaca ATCC 27029 chromosome, complete genome7e-1177.8BLASTN svgBLASTP svg
NC_014815:841484*84148489809956616Micromonospora sp. L5 chromosome, complete genome7e-1177.8BLASTN svgBLASTP svg
NC_014815:3272791*3272791329485822068Micromonospora sp. L5 chromosome, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_002944:865425*86542589916033736Mycobacterium avium subsp. paratuberculosis K-10, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_007484:3035068*3035068305935824291Nitrosococcus oceani ATCC 19707, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_018524:42357734235773425759921827Nocardiopsis alba ATCC BAA-2165 chromosome, complete genome5e-58234BLASTN svgBLASTP svg
NC_009434:28147428147430109919626Pseudomonas stutzeri A1501, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_009049:1934398*1934398196979735400Rhodobacter sphaeroides ATCC 17029 chromosome 1, complete sequence2e-1799.6BLASTN svgBLASTP svg
NC_009142:949510*94951097814228633Saccharopolyspora erythraea NRRL 2338, complete genome4e-46194BLASTN svgBLASTP svg
NC_019673:8161242*8161242818734226101Saccharothrix espanaensis DSM 44229 complete genome3e-22115BLASTN svgBLASTP svg
NC_003155:3652587*3652587369577343187Streptomyces avermitilis MA-4680, complete genome0712BLASTN svgBLASTP svg
NC_003888:5790104*5790104582064330540Streptomyces coelicolor A3(2), complete genome7e-48200BLASTN svgBLASTP svg
NC_015953:47469834746983477386726885Streptomyces sp. SirexAA-E chromosome, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_018750:62378756237875626148023606Streptomyces venezuelae ATCC 10712, complete genome7e-1177.8BLASTN svgBLASTP svg
NC_014220:1269870*1269870128997920110Syntrophothermus lipocalidus DSM 12680 chromosome, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_018870:1506918*1506918152914322226Thermacetogenium phaeum DSM 12270 chromosome, complete genome4e-1281.8BLASTN svgBLASTP svg
NC_014831:20823042082304211433932036Thermaerobacter marianensis DSM 12885 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013510:991827*991827101259920773Thermomonospora curvata DSM 43183, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_013510:4484000*4484000450600622007Thermomonospora curvata DSM 43183, complete genome3e-65258BLASTN svgBLASTP svg
NC_014377:210888*21088823415323266Thermosediminibacter oceani DSM 16646 chromosome, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_011901:62571262571266531339602Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, complete1e-0973.8BLASTN svgBLASTP svg
NC_007404:27438772743877277508731211Thiobacillus denitrificans ATCC 25259, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_003919:33961363396136342036024225Xanthomonas axonopodis pv. citri str. 306, complete genome3e-1075.8BLASTN svgBLASTP svg