Pre_GI: BLASTN Hits

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Query: NC_016582:11672500 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 11672500, End: 11690797, Length: 18298

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_014318:7480669*7480669750464523977Amycolatopsis mediterranei U32 chromosome, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_014318:2252417*2252417228159929183Amycolatopsis mediterranei U32 chromosome, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_014550:7560*75603657129012Arthrobacter arilaitensis Re117, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_013131:7889127*7889127791526926143Catenulispora acidiphila DSM 44928, complete genome8e-0660BLASTN svgBLASTP svg
NC_013174:309943*30994334995340011Jonesia denitrificans DSM 20603, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_012803:691215*69121572678835574Micrococcus luteus NCTC 2665, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_012803:2195808*2195808224976153954Micrococcus luteus NCTC 2665, complete genome3e-0867.9BLASTN svgBLASTP svg
NC_014210:16259541625954164519219239Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,1e-106394BLASTN svgBLASTP svg
NC_014659:27378432737843276016922327Rhodococcus equi 103S, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_012522:3867167*3867167389736130195Rhodococcus opacus B4, complete genome9e-154551BLASTN svgBLASTP svg
NC_009142:54598195459819548206622248Saccharopolyspora erythraea NRRL 2338, complete genome01100BLASTN svgBLASTP svg
NC_009142:5698100*5698100573806239963Saccharopolyspora erythraea NRRL 2338, complete genome2e-18101BLASTN svgBLASTP svg
NC_021177:54196205419620544465625037Streptomyces fulvissimus DSM 40593, complete genome3e-39170BLASTN svgBLASTP svg
NC_010572:17486681748668176920720540Streptomyces griseus subsp. griseus NBRC 13350, complete genome8e-111408BLASTN svgBLASTP svg
NC_010572:83524628352462839090038439Streptomyces griseus subsp. griseus NBRC 13350, complete genome2e-1591.7BLASTN svgBLASTP svg
NC_010572:28435892843589286504421456Streptomyces griseus subsp. griseus NBRC 13350, complete genome1e-1385.7BLASTN svgBLASTP svg
NC_018750:82105008210500823849928000Streptomyces venezuelae ATCC 10712, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_015957:51824605182460522128438825Streptomyces violaceusniger Tu 4113 chromosome, complete genome3e-39170BLASTN svgBLASTP svg
NC_015957:51099025109902512826818367Streptomyces violaceusniger Tu 4113 chromosome, complete genome3e-39170BLASTN svgBLASTP svg
NC_015957:49635004963500498135217853Streptomyces violaceusniger Tu 4113 chromosome, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_015957:74084667408466745609947634Streptomyces violaceusniger Tu 4113 chromosome, complete genome8e-37163BLASTN svgBLASTP svg
NC_015957:68592596859259687895419696Streptomyces violaceusniger Tu 4113 chromosome, complete genome3e-36161BLASTN svgBLASTP svg
NC_015957:73482697348269739671748449Streptomyces violaceusniger Tu 4113 chromosome, complete genome3e-30141BLASTN svgBLASTP svg
NC_015957:72498737249873727238122509Streptomyces violaceusniger Tu 4113 chromosome, complete genome3e-30141BLASTN svgBLASTP svg
NC_015957:73015467301546732710225557Streptomyces violaceusniger Tu 4113 chromosome, complete genome6e-19103BLASTN svgBLASTP svg
NC_013595:3541012*3541012356209921088Streptosporangium roseum DSM 43021, complete genome01390BLASTN svgBLASTP svg