Pre_GI: BLASTP Hits

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Query: NC_016582:8031000:8043159 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 8043159, End: 8043935, Length: 777

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016114:4614924:462923946292394629925687Streptomyces flavogriseus ATCC 33331 chromosome, complete genomehypothetical protein2e-51202
NC_015953:2640500:264603926460392646761723Streptomyces sp. SirexAA-E chromosome, complete genomehypothetical protein1e-49196
NC_010572:5445081:545944054594405460174735Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein9e-49193
NC_003888:3138905:314711831471183147951834Streptomyces coelicolor A3(2), complete genomehypothetical protein1e-38160
NC_008596:5577270:558941555894155589999585Mycobacterium smegmatis str. MC2 155, complete genomehypothetical protein3e-30132
NC_013235:2129982:213256721325672133220654Nakamurella multipartita DSM 44233, complete genomeprotein of unknown function DUF17072e-27122
NC_004369:531579:552055552055552855801Corynebacterium efficiens YS-314, complete genomehypothetical protein2e-1892.8
NC_013595:5176000:517607951760795176669591Streptosporangium roseum DSM 43021, complete genomehypothetical protein4e-1168.9
NC_014165:597000:640130640130640570441Thermobispora bispora DSM 43833 chromosome, complete genomehypothetical protein1e-0963.9
NC_013595:1100230:112581711258171126272456Streptosporangium roseum DSM 43021, complete genomehypothetical protein3e-0962.4
NC_003155:5957657:597716059771605977861702Streptomyces avermitilis MA-4680, complete genomehypothetical protein5e-0755.1
NC_007164:1434305:143882314388231439515693Corynebacterium jeikeium K411, complete genomehypothetical protein3e-0652.4