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Query: NC_016582:5393568:5401343 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 5401343, End: 5401906, Length: 564

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017093:1411532:141373414137341414318585Actinoplanes missouriensis 431, complete genomeputative flavoprotein1e-24112
NC_017186:6539181:655216065521606552717558Amycolatopsis mediterranei S699 chromosome, complete genomeflavoprotein7e-1580.1
NC_014318:6539137:655211665521166552673558Amycolatopsis mediterranei U32 chromosome, complete genomeflavoprotein7e-1580.1
NC_014666:8488567:849485384948538495404552Frankia sp. EuI1c chromosome, complete genomeflavoprotein5e-43173
NC_014666:1601972:161028416102841610862579Frankia sp. EuI1c chromosome, complete genomeflavoprotein2e-1168.9
NC_013729:3573000:358366435836643584200537Kribbella flavida DSM 17836, complete genomeflavoprotein6e-0857.4
NC_014211:439611:447438447438447983546Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 plasmidflavoprotein8e-23106
NC_009953:3224412:323307432330743233649576Salinispora arenicola CNS-205 chromosome, complete genomeflavoprotein6e-1994
NC_021177:3867439:388059338805933881138546Streptomyces fulvissimus DSM 40593, complete genomeFlavoprotein2e-1788.6
NC_021177:4258102:426661342666134267185573Streptomyces fulvissimus DSM 40593, complete genomehypothetical protein6e-52203
NC_013929:2375613:243821524382152438769555Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein4e-1891.3
NC_013929:5431954:543396354339635434508546Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein3e-1581.6
NC_018750:6588206:660981066098106610337528Streptomyces venezuelae ATCC 10712, complete genomePhosphopantothenoylcysteine decarboxylase1e-1893.2
NC_015957:1070500:108142510814251081988564Streptomyces violaceusniger Tu 4113 chromosome, complete genomeflavoprotein2e-89327
NC_007333:430000:441839441839442399561Thermobifida fusca YX, complete genomehypothetical protein2e-2098.6
NC_013510:747042:757273757273757773501Thermomonospora curvata DSM 43183, complete genomeflavoprotein2e-1478.6
NC_013510:2432879:243956224395622440116555Thermomonospora curvata DSM 43183, complete genomeflavoprotein6e-24110
NC_015434:1313979:132840213284021328971570Verrucosispora maris AB-18-032 chromosome, complete genomeflavoprotein8e-22103