Pre_GI: BLASTP Hits

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Query: NC_016582:10638524:10652712 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 10652712, End: 10653239, Length: 528

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014391:2579919:2594395259439525957771383Micromonospora aurantiaca ATCC 27029 chromosome, complete genometransposase IS4 family protein7e-29126
NC_014391:1967167:1995017199501719963991383Micromonospora aurantiaca ATCC 27029 chromosome, complete genometransposase IS4 family protein7e-29126
NC_009380:636000:6409706409706421271158Salinispora tropica CNB-440 chromosome, complete genomehypothetical protein3e-21101
NC_013235:4975947:4979917497991749813381422Nakamurella multipartita DSM 44233, complete genometransposase IS4 family protein1e-1789.4
NC_008595:1951887:1962064196206419634701407Mycobacterium avium 104, complete genomeputative transposase1e-1789
NC_014814:4809607:4823733482373348251391407Mycobacterium sp. Spyr1 chromosome, complete genometransposase, IS4 family2e-1788.2
NC_014814:4809607:4829284482928448306901407Mycobacterium sp. Spyr1 chromosome, complete genometransposase, IS4 family2e-1788.2
NC_009338:603663:6247436247436261491407Mycobacterium gilvum PYR-GCK chromosome, complete genometransposase, IS4 family protein2e-1788.2
NC_014814:4326500:4327337432733743287431407Mycobacterium sp. Spyr1 chromosome, complete genometransposase, IS4 family4e-1787.4
NC_013235:4975947:499519349951934996161969Nakamurella multipartita DSM 44233, complete genome5e-1684
NC_013235:2257899:2286870228687022882671398Nakamurella multipartita DSM 44233, complete genometransposase IS4 family protein4e-1477.4
NC_013235:2257899:2274988227498822763851398Nakamurella multipartita DSM 44233, complete genometransposase IS4 family protein5e-1477
NC_009338:3359500:3370171337017133714721302Mycobacterium gilvum PYR-GCK chromosome, complete genometransposase, IS4 family protein7e-1476.6
NC_013441:5025444:5027723502772350291171395Gordonia bronchialis DSM 43247, complete genometransposase IS4 family protein8e-1476.3
NC_016943:3352413:3369974336997433713861413Blastococcus saxobsidens DD2, complete genometransposase1e-1375.9
NC_016943:3270308:3313324331332433147361413Blastococcus saxobsidens DD2, complete genometransposase2e-1375.5
NC_013235:2257899:2288563228856322899571395Nakamurella multipartita DSM 44233, complete genometransposase IS4 family protein3e-1374.7
NC_009921:6691089:6693904669390466952921389Frankia sp. EAN1pec, complete genometransposase IS4 family protein3e-1271.6
NC_009921:3384116:3384116338411633855041389Frankia sp. EAN1pec, complete genometransposase IS4 family protein3e-1271.6
NC_009921:4035225:4068230406823040696181389Frankia sp. EAN1pec, complete genometransposase IS4 family protein3e-1271.6
NC_013929:4549988:4554862455486245562381377Streptomyces scabiei 87.22 chromosome, complete genometransposase5e-1167
NC_015312:1191633:1208073120807312091191047Pseudonocardia dioxanivorans CB1190 chromosome, complete genomehypothetical protein2e-1065.1
NC_014550:1487062:1498112149811214995481437Arthrobacter arilaitensis Re117, complete genometransposase of ISAar9, IS1380 family7e-0960.1
NC_014550:2091797:2122145212214521235811437Arthrobacter arilaitensis Re117, complete genometransposase of ISAar8, IS1380 family1e-0859.3
NC_014550:2562053:2583430258343025848661437Arthrobacter arilaitensis Re117, complete genometransposase of ISAar11, IS1380 family5e-0857.4
NC_014550:1487062:1487062148706214883601299Arthrobacter arilaitensis Re117, complete genometransposase of ISAar10, IS1380 family1e-0756.2
NC_015859:3177199:319227431922743193068795Corynebacterium variabile DSM 44702 chromosome, complete genometransposase for insertion sequence element2e-0755.5
NC_008271:35909:442514425144886636Rhodococcus sp. RHA1 plasmid pRHL3, complete sequenceprobable transposase3e-0754.7
NC_020302:744956:7532197532197545951377Corynebacterium halotolerans YIM 70093 = DSM 44683, completetransposase IS4 family protein6e-0753.5
NC_020302:744956:7632717632717646471377Corynebacterium halotolerans YIM 70093 = DSM 44683, completetransposase IS4 family protein6e-0753.5
NC_009380:636000:640759640759640941183Salinispora tropica CNB-440 chromosome, complete genomehypothetical protein8e-0650.1