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Query: NC_016582:10638524:10638524 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 10638524, End: 10640464, Length: 1941

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009925:5957806:5976739597673959786971959Acaryochloris marina MBIC11017, complete genomeRhs element Vgr protein2e-46187
NC_014958:3207431:3219009321900932207151707Deinococcus maricopensis DSM 21211 chromosome, complete genomeRhs element Vgr protein7e-46186
NC_014623:1883259:1886656188665618884521797Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeRhs element Vgr protein8e-1582.8
NC_011898:1829581:1829581182958118306271047Clostridium cellulolyticum H10, complete genomephage protein D2e-1378.2
NC_012912:777592:7775927775927793821791Dickeya zeae Ech1591, complete genomeRhs element Vgr protein3e-1377.8
NC_015638:2511249:2523131252313125248971767Lacinutrix sp. 5H-3-7-4 chromosome, complete genomeRhs element Vgr protein9e-1375.9
NC_010995:4403463:4404148440414844059411794Cellvibrio japonicus Ueda107, complete genomeRhs element Vgr protein5e-1273.6
NC_014934:4259670:4278907427890742806881782Cellulophaga algicola DSM 14237 chromosome, complete genomerhs element vgr protein2e-0964.7
NC_016510:1828978:1838566183856618404851920Flavobacterium columnare ATCC 49512 chromosome, complete genomeRhs element Vgr protein9e-0962.8
NC_016510:2991687:3002493300249330044121920Flavobacterium columnare ATCC 49512 chromosome, complete genomeRhs element Vgr protein9e-0962.8
NC_016510:871000:8803498803498822711923Flavobacterium columnare ATCC 49512 chromosome, complete genomeRhs element Vgr protein8e-0962.8
NC_011898:1829581:183062418306241831343720Clostridium cellulolyticum H10, complete genomeRhs element Vgr protein1e-0862.4
NC_010995:3604695:3622725362272536237711047Cellvibrio japonicus Ueda107, complete genomehypothetical protein1e-0758.5
NC_014934:4259670:4261249426124942630601812Cellulophaga algicola DSM 14237 chromosome, complete genomerhs element vgr protein2e-0757.8
NC_015164:1208874:1223342122334212251531812Bacteroides salanitronis DSM 18170 chromosome, complete genomeRhs element Vgr protein9e-0755.8
NC_017075:2733898:2733898273389827369033006Rubrivivax gelatinosus IL144, complete genomehypothetical protein2e-0654.7