Pre_GI: BLASTP Hits

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Query: NC_016582:10015558:10024191 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 10024191, End: 10026251, Length: 2061

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003155:921494:9359539359539387272775Streptomyces avermitilis MA-4680, complete genomemagnesium or manganese-dependent protein phosphatase6e-123441
NC_015957:115133:1151331151331177992667Streptomyces violaceusniger Tu 4113 chromosome, complete genomesignal transduction histidine kinase regulating citrate/malate metabolism4e-120432
NC_016109:5290000:5314849531484953173112463Kitasatospora setae KM-6054, complete genomeputative protein kinase/phosphatase5e-97355
NC_016109:5290000:5311921531192153146922772Kitasatospora setae KM-6054, complete genomeputative protein kinase/phosphatase1e-93344
NC_016582:1639375:1662621166262116654342814Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative regulatory protein phosphatase1e-78294
NC_015953:2603526:2606636260663626089152280Streptomyces sp. SirexAA-E chromosome, complete genomeputative PAS/PAC sensor protein3e-77290
NC_021177:3867439:3867439386743938691661728Streptomyces fulvissimus DSM 40593, complete genomeMagnesium or manganese-dependent protein phosphatase4e-44180
NC_003888:4523500:4526332452633245279901659Streptomyces coelicolor A3(2), complete genomehypothetical protein3e-44180
NC_010572:4585500:4587521458752145893051785Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein2e-40167
NC_016582:7033000:7033222703322270352732052Streptomyces bingchenggensis BCW-1 chromosome, complete genomemagnesium or manganese-dependent protein phosphatase2e-40167
NC_018750:3859127:3872413387241338745302118Streptomyces venezuelae ATCC 10712, complete genomehypothetical protein8e-32139
NC_007333:1743890:1788670178867017905261857Thermobifida fusca YX, complete genomePAS:Protein phosphatase 2C-like:GAF7e-31136
NC_013510:1849751:1868469186846918705502082Thermomonospora curvata DSM 43183, complete genomeputative PAS/PAC sensor protein3e-28127
NC_017955:3670670:3685066368506636871922127Modestobacter marinus, complete genometwo-component PAS/PAC sensor protein1e-27125
NC_009664:570768:5737565737565755071752Kineococcus radiotolerans SRS30216, complete genomeputative PAS/PAC sensor protein1e-26122
NC_019673:6394319:6454744645474464562671524Saccharothrix espanaensis DSM 44229 complete genomeResponse regulator receiver modulated serine phosphatase7e-24112
NC_013510:5394432:5415681541568154194273747Thermomonospora curvata DSM 43183, complete genomemulti-sensor hybrid histidine kinase7e-24112
NC_021177:7870464:7884763788476378889084146Streptomyces fulvissimus DSM 40593, complete genomePAS/PAC sensor hybrid histidine kinase3e-23110
NC_017955:3731480:3784366378436637865642199Modestobacter marinus, complete genomehypothetical protein1e-22108
NC_017955:3731480:3749996374999637517651770Modestobacter marinus, complete genomehypothetical protein4e-22107
NC_016943:2054688:2071109207110920728781770Blastococcus saxobsidens DD2, complete genomeSerine phosphatase RsbU, regulator of sigma subunit3e-22107
NC_013595:8338619:8338619833861983417743156Streptosporangium roseum DSM 43021, complete genomeSignal transduction histidine kinase-like protein1e-21105
NC_017955:3057592:3078117307811730796641548Modestobacter marinus, complete genomePAS/PAC sensor protein1e-21105
NC_015953:5444572:5460375546037554629992625Streptomyces sp. SirexAA-E chromosome, complete genomeputative PAS/PAC sensor protein6e-2099.8
NC_015671:3211972:3231317323131732335992283Cellvibrio gilvus ATCC 13127 chromosome, complete genomeputative PAS/PAC sensor protein3e-1894.4
NC_013510:5394432:5411450541145054156014152Thermomonospora curvata DSM 43183, complete genomemulti-sensor signal transduction histidine kinase5e-1893.6
NC_013510:3065000:3084646308464630867122067Thermomonospora curvata DSM 43183, complete genomeprotein serine phosphatase with GAF(s) sensor(s)1e-1792
NC_013757:1438812:1469969146996914722812313Geodermatophilus obscurus DSM 43160, complete genomeputative PAS/PAC sensor protein3e-1790.9
NC_018750:5828000:5841875584187558445202646Streptomyces venezuelae ATCC 10712, complete genomeregulatory protein1e-1688.6
NC_014165:2081914:210025221002522101181930Thermobispora bispora DSM 43833 chromosome, complete genomeprotein serine/threonine phosphatase1e-1585.5
NC_015565:2827444:2832013283201328332181206Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeprotein serine/threonine phosphatase5e-1583.6
NC_009921:5508000:5508728550872855099571230Frankia sp. EAN1pec, complete genomeputative PAS/PAC sensor protein1e-1482.4
NC_008148:1711679:1713663171366317147961134Rubrobacter xylanophilus DSM 9941, complete genomeputative PAS/PAC sensor protein2e-1481.3
NC_018750:6588206:660790366079036608355453Streptomyces venezuelae ATCC 10712, complete genomeprobable regulatory protein3e-1480.9
NC_013093:1036772:1079924107992410814801557Actinosynnema mirum DSM 43827, complete genomeprotein serine/threonine phosphatase4e-1273.6
NC_010655:1808657:1810066181006618117031638Akkermansia muciniphila ATCC BAA-835, complete genomeputative PAS/PAC sensor protein7e-1273.2
NC_010814:2217153:2238961223896122422093249Geobacter lovleyi SZ, complete genomeputative phytochrome sensor protein8e-1272.8
NC_015953:3782302:3782302378230237837711470Streptomyces sp. SirexAA-E chromosome, complete genomeprotein serine/threonine phosphatase3e-1170.9
NC_013960:452493:4651284651284671822055Nitrosococcus halophilus Nc4 chromosome, complete genomePAS sensor protein6e-1170.1
NC_016114:4333390:4349517434951743507971281Streptomyces flavogriseus ATCC 33331 chromosome, complete genomePAS/PAC sensor protein7e-1169.7
NC_015434:6020178:6020178602017860213141137Verrucosispora maris AB-18-032 chromosome, complete genomeresponse regulator receiver modulated serine phosphatase1e-1068.6
NC_006576:1743500:1760393176039317617811389Synechococcus elongatus PCC 6301, complete genomehypothetical protein1e-1068.6
NC_007604:2555000:2555003255500325563911389Synechococcus elongatus PCC 7942, complete genomeserine phosphatase1e-1068.6
NC_014815:3005970:3022239302223930234501212Micromonospora sp. L5 chromosome, complete genomeresponse regulator receiver modulated serine phosphatase2e-1068.6
NC_007777:2749422:275696227569622757555594Frankia sp. CcI3, complete genomeputative serine/threonine kinaseanti-sigma factor2e-1068.2
NC_010572:4024810:4037560403756040392991740Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein3e-1067.4
NC_003155:4906639:4930332493033249317801449Streptomyces avermitilis MA-4680, complete genomemagnesium or manganese-dependent protein phosphatase4e-1067.4
NC_014844:3469848:3485824348582434885982775Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomePAS sensor protein4e-1067
NC_007205:60069:7711577115784611347Candidatus Pelagibacter ubique HTCC1062, complete genomeSigma factor sigB regulation protein6e-1066.6
NC_016111:3577572:358579435857943586369576Streptomyces cattleya NRRL 8057, complete genomeregulatory protein6e-1066.6
NC_003155:5163382:5184516518451651859101395Streptomyces avermitilis MA-4680, complete genomemagnesium or manganese-dependent protein phosphatase1e-0965.5
NC_003888:8569962:8581406858140685831091704Streptomyces coelicolor A3(2), complete genomehypothetical protein2e-0964.7
NC_007333:3244572:325636332563633256776414Thermobifida fusca YX, complete genomehypothetical protein3e-0964.3
NC_016751:1700164:1703150170315017045621413Marinitoga piezophila KA3 chromosome, complete genomeserine phosphatase RsbU, regulator of sigma subunit8e-0962.8
NC_017290:1096599:1117259111725911191661908Chlamydophila psittaci 08DC60 chromosome, complete genomeputative regulatory protein1e-0862
NC_010162:1222000:1243753124375312455251773Sorangium cellulosum 'So ce 56', complete genomehypothetical protein3e-0861.2
NC_014219:567033:5670335670335680461014Bacillus selenitireducens MLS10 chromosome, complete genomeprotein serine/threonine phosphatase4e-0860.8
NC_012108:904260:9267529267529284521701Desulfobacterium autotrophicum HRM2, complete genomeRsbP3e-0860.8
NC_014976:2735423:2735423273542327364301008Bacillus subtilis BSn5 chromosome, complete genomeserine phosphatase4e-0860.5
NC_019896:3491000:3518845351884535198521008Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completeSigma factor sig regulation protein RsbU4e-0860.5
NC_015573:569625:571222571222571938717Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeprotein serine/threonine phosphatase4e-0860.5
NC_015957:7249873:726567072656707266197528Streptomyces violaceusniger Tu 4113 chromosome, complete genome6e-0860.1
NC_014165:27246:454424544245897456Thermobispora bispora DSM 43833 chromosome, complete genomeputative anti-sigma regulatory factor, serine/threonine protein kinase5e-0860.1
NC_016047:637778:6377786377786387851008Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completephosphoserine phosphatase RsbU5e-0860.1
NC_016111:4003290:401778740177874018248462Streptomyces cattleya NRRL 8057, complete genomehypothetical protein5e-0860.1
NC_006510:1501487:1517620151762015203252706Geobacillus kaustophilus HTA426, complete genomehypothetical protein7e-0859.7
NC_008536:5421036:5441250544125054424371188Solibacter usitatus Ellin6076, complete genomeresponse regulator receiver modulated serine phosphatase7e-0859.7
NC_016582:6999074:701240870124087013058651Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein1e-0759.3
NC_003888:7706226:771280577128057713266462Streptomyces coelicolor A3(2), complete genomehypothetical protein1e-0759.3
NC_010337:2339056:2351249235124923524331185Heliobacterium modesticaldum Ice1, complete genomeresponse regulator receiver modulated serine phosphatase1e-0758.9
NC_021177:7870464:7889172788917278902871116Streptomyces fulvissimus DSM 40593, complete genomeMagnesium or manganese-dependent protein phosphatase1e-0758.9
NC_003155:6295078:630453263045326305194663Streptomyces avermitilis MA-4680, complete genomehypothetical protein1e-0758.5
NC_013929:6343000:635622163562216356853633Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein3e-0757.8
NC_011983:508287:5207735207735230972325Agrobacterium radiobacter K84 chromosome 2, complete genometranscriptional regulator protein3e-0757.4
NC_013929:3986272:400635840063584006705348Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein3e-0757.4
NC_010572:4505428:451288745128874513312426Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative regulatory protein containing a conserved C-terminal domain4e-0757.4
NC_007777:461500:472130472130472741612Frankia sp. CcI3, complete genomeputative signal transduction histidine kinase5e-0757
NC_013929:5431954:543593854359385436402465Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein5e-0757
NC_010572:188500:1921121921121935001389Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein5e-0757
NC_007484:3358000:3369303336930333715672265Nitrosococcus oceani ATCC 19707, complete genomePAS sensor, serine phosphatase RsbU regulator of sigma subunit4e-0757
NC_014165:2888961:290422029042202904699480Thermobispora bispora DSM 43833 chromosome, complete genomeputative anti-sigma regulatory factor, serine/threonine protein kinase5e-0756.6
NC_003888:6470909:648284364828436483358516Streptomyces coelicolor A3(2), complete genomehypothetical protein6e-0756.6
NC_016111:1546505:156117815611781561573396Streptomyces cattleya NRRL 8057, complete genomeRegulatory protein (fragment)7e-0756.6
NC_004193:375416:6539466539466549591014Oceanobacillus iheyensis HTE831, complete genomeindirect positive regulator of sigma-B activity1e-0655.8
NC_013093:3768790:377299837729983773411414Actinosynnema mirum DSM 43827, complete genomeputative anti-sigma regulatory factor, serine/threonine protein kinase1e-0655.8
NC_019757:3869047:3886897388689738885701674Cylindrospermum stagnale PCC 7417, complete genomeserine phosphatase RsbU, regulator of sigma subunit9e-0755.8
NC_013410:2691437:2693584269358426949061323Fibrobacter succinogenes subsp. succinogenes S85 chromosome,protein serine/threonine phosphatase1e-0655.5
NC_015957:336500:3380803380803394861407Streptomyces violaceusniger Tu 4113 chromosome, complete genomeprotein serine/threonine phosphatase2e-0655.1
NC_018704:347948:3504003504003514101011Amphibacillus xylanus NBRC 15112, complete genomephosphoserine phosphatase RsbU2e-0655.1
NC_013093:2547608:255503225550322555436405Actinosynnema mirum DSM 43827, complete genomehypothetical protein3e-0654.3
NC_016111:4613599:462047546204754620912438Streptomyces cattleya NRRL 8057, complete genomeregulatory protein (fragment)4e-0653.9
NC_003155:210240:2228712228712246911821Streptomyces avermitilis MA-4680, complete genomehypothetical protein4e-0653.9
NC_013510:2432879:244682024468202447224405Thermomonospora curvata DSM 43183, complete genomeputative anti-sigma regulatory factor, serine/threonine protein kinase4e-0653.9
NC_019745:2346970:2346970234697023494142445Gloeocapsa sp. PCC 7428, complete genomemulti-sensor hybrid histidine kinase4e-0653.9
NC_016582:9551123:955554795555479555966420Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein6e-0653.5
NC_013595:8603188:862337686233768623834459Streptosporangium roseum DSM 43021, complete genomeputative anti-sigma regulatory factor, serine/threonine protein kinase5e-0653.5
NC_016111:2952338:295743429574342958006573Streptomyces cattleya NRRL 8057, complete genomehypothetical protein5e-0653.5
NC_016622:527688:5342885342885354751188Azospirillum lipoferum 4B, complete genomeputative two-component response regulator6e-0653.1
NC_016111:1766010:182153018215301822018489Streptomyces cattleya NRRL 8057, complete genomehypothetical protein7e-0653.1
NC_015957:690817:7096307096307108351206Streptomyces violaceusniger Tu 4113 chromosome, complete genomeprotein serine/threonine phosphatase8e-0652.8
NC_013739:5705325:5737786573778657389641179Conexibacter woesei DSM 14684, complete genomeresponse regulator receiver modulated serine phosphatase8e-0652.8