Pre_GI: BLASTN Hits

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Query: NC_015224:610807 Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,

Start: 610807, End: 628776, Length: 17970

Host Lineage: Yersinia enterocolitica; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. This species is a food and waterborn pathogen that causes gastroenteritis (inflammation of the mucous membranes of the stomach and intestine) and is able to proliferate at temperatures as low as 4 degrees C.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_015224:44261674426167445165025484Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,04657BLASTN svgBLASTP svg
NC_015224:35875003587500361767930180Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,04536BLASTN svgBLASTP svg
NC_015224:27019142701914272426222349Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,02401BLASTN svgBLASTP svg
NC_015224:4386599*4386599441050923911Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,02393BLASTN svgBLASTP svg
NC_015224:2095816*2095816211873722922Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,02375BLASTN svgBLASTP svg
NC_008563:33321143332114335140519292Escherichia coli APEC O1, complete genome0791BLASTN svgBLASTP svg
NC_015224:27903727903730366824632Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,7e-176624BLASTN svgBLASTP svg
NC_020064:3157656*3157656318828830633Serratia marcescens FGI94, complete genome3e-138500BLASTN svgBLASTP svg
NC_020064:15014411501441151984318403Serratia marcescens FGI94, complete genome4e-122446BLASTN svgBLASTP svg
NC_010067:51000510007450923510Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete9e-83315BLASTN svgBLASTP svg
NC_004631:53125453125455515123898Salmonella enterica subsp. enterica serovar Typhi Ty2, complete7e-68266BLASTN svgBLASTP svg
NC_003198:2453074*2453074247785124778Salmonella enterica subsp. enterica serovar Typhi str. CT18,7e-68266BLASTN svgBLASTP svg
NC_006511:529424*52942455225122828Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC2e-65258BLASTN svgBLASTP svg
NC_014121:45773244577324460113023807Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete6e-59236BLASTN svgBLASTP svg
NC_014500:1862000*1862000191726855269Dickeya dadantii 3937 chromosome, complete genome3e-33151BLASTN svgBLASTP svg
CU928145:4792703*4792703481092818226Escherichia coli 55989 chromosome, complete genome2e-31145BLASTN svgBLASTP svg
NC_004337:3049118*3049118311609966982Shigella flexneri 2a str. 301, complete genome2e-31145BLASTN svgBLASTP svg
NC_004741:3041294*3041294310468963396Shigella flexneri 2a str. 2457T, complete genome2e-31145BLASTN svgBLASTP svg
NC_007384:33839833383983340296018978Shigella sonnei Ss046, complete genome2e-31145BLASTN svgBLASTP svg
NC_011748:4792703*4792703481092818226Escherichia coli 55989, complete genome2e-31145BLASTN svgBLASTP svg
NC_008253:47354184735418477925943842Escherichia coli 536, complete genome4e-29137BLASTN svgBLASTP svg
NC_007946:47797454779745482809648352Escherichia coli UTI89, complete genome4e-29137BLASTN svgBLASTP svg
NC_020211:4484817*4484817450328218466Serratia marcescens WW4, complete genome2e-25125BLASTN svgBLASTP svg
NC_014228:22700002270000231663046631Xenorhabdus nematophila ATCC 19061, complete genome7e-25123BLASTN svgBLASTP svg
NC_011750:47757704775770480021124442Escherichia coli IAI39 chromosome, complete genome7e-25123BLASTN svgBLASTP svg
NC_009788:16360163603711520756Escherichia coli E24377A plasmid pETEC_73, complete sequence3e-24121BLASTN svgBLASTP svg
NC_009792:32259653225965324431718353Citrobacter koseri ATCC BAA-895, complete genome1e-23119BLASTN svgBLASTP svg
CP002797:46563274656327468071624390Escherichia coli NA114, complete genome4e-23117BLASTN svgBLASTP svg
NC_012214:3931824*3931824395459922776Erwinia pyrifoliae Ep1/96, complete genome2e-22115BLASTN svgBLASTP svg
NC_011751:50705975070597508906918473Escherichia coli UMN026 chromosome, complete genome1e-20109BLASTN svgBLASTP svg
NC_010473:46303614630361465014819788Escherichia coli str. K-12 substr. DH10B, complete genome1e-20109BLASTN svgBLASTP svg
NC_000913:45282784528278455238424107Escherichia coli K12, complete genome1e-20109BLASTN svgBLASTP svg
AC_000091:45349354534935455904124107Escherichia coli W3110 DNA, complete genome1e-20109BLASTN svgBLASTP svg
NC_010102:4745949*4745949476837922431Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,2e-19105BLASTN svgBLASTP svg
NC_006905:3780000*3780000380296822969Salmonella enterica subsp. enterica serovar Choleraesuis str1e-1799.6BLASTN svgBLASTP svg
NC_013716:27645502764550279838233833Citrobacter rodentium ICC168, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_011149:46774124677412471244835037Salmonella enterica subsp. enterica serovar Agona str. SL483,6e-1693.7BLASTN svgBLASTP svg
NC_011149:1987291*1987291203423646946Salmonella enterica subsp. enterica serovar Agona str. SL483,6e-1693.7BLASTN svgBLASTP svg
NC_011149:10775891077589110031022722Salmonella enterica subsp. enterica serovar Agona str. SL483,6e-1693.7BLASTN svgBLASTP svg
NC_006905:39427533942753396819425442Salmonella enterica subsp. enterica serovar Choleraesuis str6e-1693.7BLASTN svgBLASTP svg
NC_015566:2039431*2039431206952030090Serratia sp. AS12 chromosome, complete genome2e-1591.7BLASTN svgBLASTP svg
NC_015567:2039443*2039443205864519203Serratia sp. AS9 chromosome, complete genome2e-1591.7BLASTN svgBLASTP svg
NC_004838:510135101310003049018Yersinia pestis KIM plasmid pMT-1, complete sequence2e-1281.8BLASTN svgBLASTP svg
NC_005810:12309761230976125037019395Yersinia pestis biovar Microtus str. 91001, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_005810:15200001520000154409924100Yersinia pestis biovar Microtus str. 91001, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_005810:25086712508671253418625516Yersinia pestis biovar Microtus str. 91001, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_005810:3021913*3021913304567123759Yersinia pestis biovar Microtus str. 91001, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_005810:31423843142384317894536562Yersinia pestis biovar Microtus str. 91001, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_005810:32727653272765329109918335Yersinia pestis biovar Microtus str. 91001, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_005810:3964468*3964468399026325796Yersinia pestis biovar Microtus str. 91001, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_005810:44691564469156448873019575Yersinia pestis biovar Microtus str. 91001, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_005815:611486114811099949852Yersinia pestis biovar Microtus str. 91001 plasmid pMT1, complete2e-1281.8BLASTN svgBLASTP svg
NC_004088:29370772937077296291925843Yersinia pestis KIM, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_004088:25410332541033256388322851Yersinia pestis KIM, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_004088:2366000*2366000239081024811Yersinia pestis KIM, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_003134:64672646728918124510Yersinia pestis CO92 plasmid pMT1, complete sequence2e-1281.8BLASTN svgBLASTP svg
NC_003143:16910001691000171055719558Yersinia pestis CO92, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_003143:2433190*2433190245920626017Yersinia pestis CO92, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_003143:27414782741478276426222785Yersinia pestis CO92, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_003143:31159333115933313845922527Yersinia pestis CO92, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_003143:31912463191246321275521510Yersinia pestis CO92, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_004088:12657301265730129020024471Yersinia pestis KIM, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_004088:15104671510467153309222626Yersinia pestis KIM, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_004088:1909880*1909880193439224513Yersinia pestis KIM, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_004088:22272782227278224825620979Yersinia pestis KIM, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_006155:2461262*2461262248869127430Yersinia pseudotuberculosis IP 32953, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_008118:567775677710299946223Yersinia pestis Nepal516 plasmid pMT, complete sequence2e-1281.8BLASTN svgBLASTP svg
NC_010159:138879*13887916617427296Yersinia pestis Angola, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_010159:17246917246919591323445Yersinia pestis Angola, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_010159:22523802252380227191719538Yersinia pestis Angola, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_010159:24409472440947245913218186Yersinia pestis Angola, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_010159:2546590*2546590256968123092Yersinia pestis Angola, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_010159:29555622955562297845722896Yersinia pestis Angola, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_010159:30339893033989305747023482Yersinia pestis Angola, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_010159:31692663169266318806418799Yersinia pestis Angola, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_010159:409500*40950045168242183Yersinia pestis Angola, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_010634:20046532004653202887424222Yersinia pseudotuberculosis PB1/+, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_010159:12880001288000132559537596Yersinia pestis Angola, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_010158:928199281911499922181Yersinia pestis Angola plasmid pMT-pPCP, complete sequence2e-1281.8BLASTN svgBLASTP svg
NC_008150:90500090500092909924100Yersinia pestis Antiqua, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_008120:62000620008949927500Yersinia pestis Antiqua plasmid pMT, complete sequence2e-1281.8BLASTN svgBLASTP svg
NC_008149:11226931122693115815435462Yersinia pestis Nepal516, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_008149:11956141195614122004824435Yersinia pestis Nepal516, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_008149:14403711440371146301222642Yersinia pestis Nepal516, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_008149:1842500*1842500188064438145Yersinia pestis Nepal516, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_008149:27731392773139279513521997Yersinia pestis Nepal516, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_008150:1705152*1705152174460539454Yersinia pestis Antiqua, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_008150:21737082173708219609922392Yersinia pestis Antiqua, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_008150:25747942574794259632821535Yersinia pestis Antiqua, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_008150:28226892822689284340720719Yersinia pestis Antiqua, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_020064:3998715*3998715409080492090Serratia marcescens FGI94, complete genome9e-1279.8BLASTN svgBLASTP svg
NC_004347:3670145*3670145369364023496Shewanella oneidensis MR-1, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_004347:40078474007847403509927253Shewanella oneidensis MR-1, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_015690:77858757785875784547059596Paenibacillus mucilaginosus KNP414 chromosome, complete genome3e-0867.9BLASTN svgBLASTP svg
NC_013716:5141269*5141269517008828820Citrobacter rodentium ICC168, complete genome3e-0867.9BLASTN svgBLASTP svg
NC_012880:37486653748665378917040506Dickeya dadantii Ech703, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_007492:23107932310793233159920807Pseudomonas fluorescens PfO-1, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_004347:1038253*1038253107053732285Shewanella oneidensis MR-1, complete genome2e-0661.9BLASTN svgBLASTP svg