Pre_GI: BLASTN Hits

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Query: NC_015224:3191000 Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,

Start: 3191000, End: 3210428, Length: 19429

Host Lineage: Yersinia enterocolitica; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. This species is a food and waterborn pathogen that causes gastroenteritis (inflammation of the mucous membranes of the stomach and intestine) and is able to proliferate at temperatures as low as 4 degrees C.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_010465:17240001724000174609922100Yersinia pseudotuberculosis YPIII, complete genome010210BLASTN svgBLASTP svg
NC_010634:29600002960000298209922100Yersinia pseudotuberculosis PB1/+, complete genome010170BLASTN svgBLASTP svg
NC_003143:28493772849377287209922723Yersinia pestis CO92, complete genome010170BLASTN svgBLASTP svg
NC_004088:18018191801819182425322435Yersinia pestis KIM, complete genome010170BLASTN svgBLASTP svg
NC_005810:26134562613456263609922644Yersinia pestis biovar Microtus str. 91001, complete genome010170BLASTN svgBLASTP svg
NC_008149:24111612411161243409922939Yersinia pestis Nepal516, complete genome010170BLASTN svgBLASTP svg
NC_010159:18614651861465188409922635Yersinia pestis Angola, complete genome010160BLASTN svgBLASTP svg
NC_006155:30407693040769306409923331Yersinia pseudotuberculosis IP 32953, complete genome010160BLASTN svgBLASTP svg
NC_014228:28120002812000283429522296Xenorhabdus nematophila ATCC 19061, complete genome0924BLASTN svgBLASTP svg
AC_000091:23796702379670240484125172Escherichia coli W3110 DNA, complete genome0856BLASTN svgBLASTP svg
NC_000913:23739842373984239819324210Escherichia coli K12, complete genome0856BLASTN svgBLASTP svg
NC_010473:24658442465844248995824115Escherichia coli str. K-12 substr. DH10B, complete genome0856BLASTN svgBLASTP svg
NC_010554:18710001871000189502424025Proteus mirabilis HI4320, complete genome0676BLASTN svgBLASTP svg
NC_012214:14384761438476146005421579Erwinia pyrifoliae Ep1/96, complete genome3e-163583BLASTN svgBLASTP svg
NC_013961:24411482441148246091119764Erwinia amylovora, complete genome1e-146527BLASTN svgBLASTP svg
NC_010694:13242501324250134559221343Erwinia tasmaniensis, complete genome1e-134488BLASTN svgBLASTP svg
NC_015224:4473230*4473230449714523916Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,2e-84321BLASTN svgBLASTP svg
NC_004347:1038253*1038253107053732285Shewanella oneidensis MR-1, complete genome5e-75289BLASTN svgBLASTP svg
NC_018419:86250086250088609923600Secondary endosymbiont of Ctenarytaina eucalypti chromosome,2e-47198BLASTN svgBLASTP svg
NC_002528:148274*14827417635828085Buchnera aphidicola str. APS (Acyrthosiphon pisum), complete2e-37165BLASTN svgBLASTP svg
NC_010611:79735179735182014222792Acinetobacter baumannii ACICU, complete genome2e-34155BLASTN svgBLASTP svg
NC_009085:89360189360191657222972Acinetobacter baumannii ATCC 17978, complete genome2e-34155BLASTN svgBLASTP svg
NC_004061:146862*14686216626919408Buchnera aphidicola str. Sg (Schizaphis graminum), complete genome1e-32149BLASTN svgBLASTP svg
NC_005966:71559171559173850722917Acinetobacter sp. ADP1, complete genome2e-25125BLASTN svgBLASTP svg
NC_007204:69697269697272009923128Psychrobacter arcticus 273-4, complete genome4e-1797.6BLASTN svgBLASTP svg
NC_014259:33690003369000338959720598Acinetobacter sp. DR1 chromosome, complete genome6e-1693.7BLASTN svgBLASTP svg
NC_004545:141478*14147816560324126Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genome1e-1489.7BLASTN svgBLASTP svg
NC_005061:52470452470454944624743Candidatus Blochmannia floridanus, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_010814:3332088*3332088335178319696Geobacter lovleyi SZ, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_015662:110950*11095013012219173Buchnera aphidicola (Cinara tujafilina) chromosome, complete2e-0971.9BLASTN svgBLASTP svg
AC_000091:1083798*1083798110686123064Escherichia coli W3110 DNA, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_000913:1087062*1087062110699919938Escherichia coli K12, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_004578:38173303817330384200124672Pseudomonas syringae pv. tomato str. DC3000, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_010468:2809125*2809125282748818364Escherichia coli ATCC 8739, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_003143:18800001880000190232522326Yersinia pestis CO92, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_005810:19760001976000199860722608Yersinia pestis biovar Microtus str. 91001, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_010159:29555622955562297845722896Yersinia pestis Angola, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_013194:43052054305205432971824514Candidatus Accumulibacter phosphatis clade IIA str. UW-1, complete4e-0867.9BLASTN svgBLASTP svg
NC_015437:16419416419418725523062Selenomonas sputigena ATCC 35185 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_020075:59048159048160950219022Candidatus Blochmannia chromaiodes str. 640, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_014722:20708642070864209390023037Burkholderia rhizoxinica HKI 454, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_004337:1065609*1065609109071125103Shigella flexneri 2a str. 301, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_008258:1076922*1076922110024923328Shigella flexneri 5 str. 8401, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_013716:1178383*1178383120516726785Citrobacter rodentium ICC168, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_015702:29029342902934292332320390Parachlamydia acanthamoebae UV7, complete genome9e-0660BLASTN svgBLASTP svg
NC_008702:1514707*1514707153954024834Azoarcus sp. BH72, complete genome9e-0660BLASTN svgBLASTP svg
NC_007292:58691758691761009923183Candidatus Blochmannia pennsylvanicus str. BPEN, complete genome9e-0660BLASTN svgBLASTP svg