Pre_GI: BLASTN Hits

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Query: NC_015224:2473582 Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,

Start: 2473582, End: 2492625, Length: 19044

Host Lineage: Yersinia enterocolitica; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. This species is a food and waterborn pathogen that causes gastroenteritis (inflammation of the mucous membranes of the stomach and intestine) and is able to proliferate at temperatures as low as 4 degrees C.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_011149:15784511578451159811519665Salmonella enterica subsp. enterica serovar Agona str. SL483,7e-22113BLASTN svgBLASTP svg
NC_012917:23627252362725238725724533Pectobacterium carotovorum subsp. carotovorum PC1, complete genome4e-20107BLASTN svgBLASTP svg
NC_012779:34699834699837871931722Edwardsiella ictaluri 93-146, complete genome3e-18101BLASTN svgBLASTP svg
NC_004547:18375001837500185898821489Erwinia carotovora subsp. atroseptica SCRI1043, complete genome3e-18101BLASTN svgBLASTP svg
NC_007946:16320251632025165817126147Escherichia coli UTI89, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_015566:69190*691909503025841Serratia sp. AS12 chromosome, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_015567:69190*691909503025841Serratia sp. AS9 chromosome, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_020260:3931567*3931567395659925033Cronobacter sakazakii Sp291, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_013716:16182491618249164307824830Citrobacter rodentium ICC168, complete genome6e-1073.8BLASTN svgBLASTP svg
CP002797:15910001591000160930018301Escherichia coli NA114, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_009792:14797791479779150315123373Citrobacter koseri ATCC BAA-895, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_003197:1611302*1611302163313721836Salmonella typhimurium LT2, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_008027:29090002909000292988020881Pseudomonas entomophila L48, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_020181:13442591344259136282518567Enterobacter aerogenes EA1509E, complete genome6e-0763.9BLASTN svgBLASTP svg
AC_000091:15740001574000159980025801Escherichia coli W3110 DNA, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_000913:15704311570431159611025680Escherichia coli K12, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_002655:19664641966464198957123108Escherichia coli O157:H7 EDL933, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_008253:15348401534840155611921280Escherichia coli 536, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_009800:15890001589000161490825909Escherichia coli HS, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_010473:16610001661000168573524736Escherichia coli str. K-12 substr. DH10B, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_021066:1393750*1393750141908425335Raoultella ornithinolytica B6, complete genome9e-0660BLASTN svgBLASTP svg
NC_011750:18495611849561187012520565Escherichia coli IAI39 chromosome, complete genome9e-0660BLASTN svgBLASTP svg
NC_010658:15931371593137161115518019Shigella boydii CDC 3083-94, complete genome9e-0660BLASTN svgBLASTP svg
NC_007613:15330241533024155939726374Shigella boydii Sb227, complete genome9e-0660BLASTN svgBLASTP svg