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Query: NC_014560:1366747:1375844 Helicobacter pylori SJM180 chromosome, complete genome

Start: 1375844, End: 1377244, Length: 1401

Host Lineage: Helicobacter pylori; Helicobacter; Helicobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: This strain was isolated from an Amerindian resident of San Juan Miraflores shantytown in Lima Peru with gastritis. This genus consists of organisms that colonize the mucosal layer of the gastrointestinal tract or are found enterohepatically (in the liver). It was only recently discovered (1983) by two Australians (Warren and Marshall) that this organism was associated with peptic ulcers. It is one of the most common chronic infectious organisms, and is found in half the world's population. This organism attacks the gastric epithilial surface, resulting in chronic gastritis, and can cause more severe diseases including those that lead to gastric carcinomas and lymphomas, peptic ulcers, and severe diarrhea. It is an extracellular pathogen that persists in the gastric environment, which has a very low pH, by production of the urease enzyme, which converts urea to ammonia and carbon dioxide, a process which can counteract the acidic environment by production of a base. The toxins include cytolethal distending toxin, vacuolating cytotoxin (VacA) that induces host epithelial cell apopoptosis (cell death), and the cytotoxin associated antigen (CagA) which results in alteration to the host cell signalling pathways. The CagA protein is translocated into host cells by a type IV secretion system encoded by the cag pathogenicity island.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015674:1605923:1606647160664716078581212Helicobacter bizzozeronii CIII-1, complete genomehypothetical protein1e-20101
NC_017375:77142:8246382463837191257Helicobacter pylori 83 chromosome, complete genomehypothetical protein6e-1582.4
NC_017375:1498000:1518238151823815196231386Helicobacter pylori 83 chromosome, complete genomehypothetical protein2e-55216
NC_014256:485969:4977944977944990561263Helicobacter pylori B8 chromosome, complete genomehypothetical protein9e-1685.1
NC_017063:834674:8750098750098762861278Helicobacter pylori ELS37 chromosome, complete genomehypothetical protein2e-1480.5
NC_011333:1040192:1081055108105510824401386Helicobacter pylori G27 chromosome, complete genomehypothetical protein1e-54214
NC_017371:1470582:1482303148230314835801278Helicobacter pylori Gambia94/24 chromosome, complete genomehypothetical protein7e-1582.4
NC_017372:748097:7603497603497616051257Helicobacter pylori India7 chromosome, complete genomehypothetical protein1e-1791.3
NC_000921:1007519:1052137105213710535371401Helicobacter pylori J99, complete genomehypothetical protein0834
NC_000921:1007519:1039890103989010411401251Helicobacter pylori J99, complete genomehypothetical protein8e-1582
NC_011498:448000:4559284559284573281401Helicobacter pylori P12, complete genomehypothetical protein0818
NC_014555:1526775:1572836157283615742361401Helicobacter pylori PeCan4 chromosome, complete genomehypothetical protein0835
NC_017378:1518529:1543851154385115451371287Helicobacter pylori Puno120 chromosome, complete genomehypothetical protein1e-1687.8
NC_010698:870312:8773418773418787261386Helicobacter pylori Shi470, complete genomehypothetical protein6e-56218
NC_014560:1366747:1402526140252614038031278Helicobacter pylori SJM180 chromosome, complete genomehypothetical protein1e-1584.7
NC_017376:57500:6384863848652331386Helicobacter pylori SNT49 chromosome, complete genomehypothetical protein9e-55214
NC_017361:1528239:1563366156336615647661401Helicobacter pylori SouthAfrica7 chromosome, complete genomehypothetical protein0832
NC_017361:930280:9371329371329385171386Helicobacter pylori SouthAfrica7 chromosome, complete genomehypothetical protein2e-54213