Pre_GI: BLASTN Hits

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Query: NC_014169:1909482 Bifidobacterium longum subsp. longum JDM301 chromosome, complete

Start: 1909482, End: 1932745, Length: 23264

Host Lineage: Bifidobacterium longum; Bifidobacterium; Bifidobacteriaceae; Bifidobacteriales; Actinobacteria; Bacteria

General Information: Representatives of this genus naturally colonize the human gastrointestinal tract (GIT) and are important for establishing and maintaining homeostasis of the intestinal ecosystem to allow for normal digestion. Their presence has been associated with beneficial health effects, such as prevention of diarrhea, amelioration of lactose intolerance, or immunomodulation. The stabilizing effect on GIT microflora is attributed to the capacity of bifidobacteria to produce bacteriocins, which are bacteriostatic agents with a broad spectrum of action, and to their pH-reducing activity. Most of the ~30 known species of bifidobacteria have been isolated from the mammalian GIT, and some from the vaginal and oral cavity. All are obligate anaerobes belonging to the Actinomycetales, branch of Gram-positive bacteria with high GC content that also includes Corynebacteria, Mycobacteria, and Streptomycetes. This organism is found in adult humans and formula fed infants as a normal component of gut flora.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_013204:929434*92943496906339630Eggerthella lenta DSM 2243, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_000913:27207127207130179729727Escherichia coli K12, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_010473:24742924742927209924671Escherichia coli str. K-12 substr. DH10B, complete genome7e-0763.9BLASTN svgBLASTP svg
AC_000091:27332527332530179728473Escherichia coli W3110 DNA, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_006510:19019541901954192057718624Geobacillus kaustophilus HTA426, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_020210:19080001908000193254124542Geobacillus sp. GHH01, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_010162:76200007620000764815128152Sorangium cellulosum 'So ce 56', complete genome4e-0867.9BLASTN svgBLASTP svg