Pre_GI: BLASTN Hits

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Query: NC_013410:2691437 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 2691437, End: 2716894, Length: 25458

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_002927:3827211*3827211386878341573Bordetella bronchiseptica RB50, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_014376:693820*69382071739923580Clostridium saccharolyticum WM1 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014323:4792048*4792048483609944052Herbaspirillum seropedicae SmR1 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_011757:748223*74822379542247200Methylobacterium chloromethanicum CM4, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_012808:594000*59400061960225603Methylobacterium extorquens AM1, complete genome3e-0661.9BLASTN svgBLASTP svg