Pre_GI: BLASTP Hits

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Query: NC_012917:2362725:2362725 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 2362725, End: 2363636, Length: 912

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008752:1523768:152376815237681524679912Acidovorax avenae subsp. citrulli AAC00-1, complete genomeprotein of unknown function DUF6, transmembrane9e-78290
NC_014656:1536540:155667915566791557635957Bifidobacterium longum subsp. longum BBMN68 chromosome, completemethyl viologen exporter1e-46187
NC_015563:6357653:635671063567106357696987Delftia sp. Cs1-4 chromosome, complete genomehypothetical protein2e-57223
NC_011750:1809943:182346818234681824292825Escherichia coli IAI39 chromosome, complete genomehypothetical protein5e-89327
NC_002655:2015000:201988220198822020763882Escherichia coli O157:H7 EDL933, complete genomehypothetical protein2e-99362
NC_011353:1971145:198231019823101983191882Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein2e-99362
NC_002695:2056545:206771020677102068534825Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein1e-89329
NC_013008:1971662:198128619812861982167882Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein2e-99362
NC_013941:1857724:187217418721741873055882Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein2e-99362
NC_010498:1700447:170462317046231705504882Escherichia coli SMS-3-5, complete genomehypothetical protein9e-99360
NC_014323:3669704:367214836721483673071924Herbaspirillum seropedicae SmR1 chromosome, complete genomedrug/metabolite transporter (DMT) superfamily permease6e-88324
NC_007947:577315:579723579723580640918Methylobacillus flagellatus KT, complete genomeprotein of unknown function DUF6, transmembrane2e-65249
NC_017328:1835108:184345518434551844336882Shigella flexneri 2002017 chromosome, complete genomehypothetical protein1e-96352
NC_004741:1823000:182785818278581828739882Shigella flexneri 2a str. 2457T, complete genomehypothetical protein1e-96352
NC_004337:1783645:179013517901351791016882Shigella flexneri 2a str. 301, complete genomehypothetical protein1e-96352
NC_008258:1784637:178951617895161790340825Shigella flexneri 5 str. 8401, complete genomehypothetical protein3e-88325
NC_016822:1818897:182371918237191824600882Shigella sonnei 53G, complete genomearomatic amino acid exporter2e-98358
NC_007384:1737885:174439717443971745278882Shigella sonnei Ss046, complete genomehypothetical protein2e-98358