Pre_GI: BLASTP Hits

Some Help

Query: NC_012917:1840172:1879652 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 1879652, End: 1879728, Length: 77

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012912:2800884:28041522804152280422877Dickeya zeae Ech1591, complete genometRNA-Pro1e-0652
NC_014618:1593360:16052481605248160532477Enterobacter cloacae SCF1 chromosome, complete genometRNA-Pro1e-0652
NC_010067:660659:67633367633367640674Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completetRNA-Pro6e-0649.7
NC_016831:687549:70939170939170946474Salmonella enterica subsp. enterica serovar Gallinarum/pullorumtRNA-Pro6e-0649.7
NC_010102:683444:71498271498271505574Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,tRNA-Pro6e-0649.7
NC_012125:1517925:15398721539872153994877Salmonella enterica subsp. enterica serovar Paratyphi C straintRNA-Pro1e-0652
NC_016832:687000:70745170745170752777Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,tRNA-Pro1e-0652
NC_004631:685357:70749770749770757377Salmonella enterica subsp. enterica serovar Typhi Ty2, completetRNA-Pro1e-0652
NC_016810:2325190:23284702328470232854374Salmonella enterica subsp. enterica serovar Typhimurium strtRNA-Pro6e-0649.7
NC_016860:2323017:23262972326297232637377Salmonella enterica subsp. enterica serovar Typhimurium strtRNA-Pro1e-0652
NC_016856:2379027:23823072382307238238377Salmonella enterica subsp. enterica serovar Typhimurium str. 14028StRNA-Pro1e-0652
NC_017046:2324554:23278342327834232791077Salmonella enterica subsp. enterica serovar Typhimurium str. 798tRNA-Pro1e-0652
NC_016857:2325190:23284702328470232854677Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74tRNA-Pro1e-0652
NC_020064:3157656:31642093164209316428577Serratia marcescens FGI94, complete genometRNA-Pro8e-0648.9