Pre_GI: BLASTP Hits

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Query: NC_012917:1840172:1877280 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 1877280, End: 1877921, Length: 642

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016845:575123:596701596701597375675Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein2e-22105
NC_011149:1077589:109262210926221093464843Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein1e-1790.1
NC_016612:5600177:561420456142045614845642Klebsiella oxytoca KCTC 1686 chromosome, complete genomehypothetical protein5e-0651.2