Pre_GI: BLASTP Hits

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Query: NC_012917:1840172:1845918 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 1845918, End: 1846247, Length: 330

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013421:3117639:313048631304863130815330Pectobacterium wasabiae WPP163, complete genomehypothetical protein6e-60228
NC_008800:2127918:214062721406272140956330Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,hypothetical protein9e-46181
NC_015224:2061951:207114820711482071477330Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,hypothetical protein3e-45180
NC_015567:2125415:214703621470362147365330Serratia sp. AS9 chromosome, complete genomehypothetical protein8e-42168
NC_015566:2125403:214702421470242147353330Serratia sp. AS12 chromosome, complete genomehypothetical protein8e-42168
NC_013956:1762171:180457018045701804899330Pantoea ananatis LMG 20103 chromosome, complete genomehypothetical protein7e-42168
NC_014618:2705769:271722327172232717564342Enterobacter cloacae SCF1 chromosome, complete genomehypothetical protein1e-39161
NC_020453:7409402:741027774102777410609333Agromonas oligotrophica S58 DNA, complete genomehypothetical protein2e-36150
NC_020126:2216926:222830622283062228488183Myxococcus stipitatus DSM 14675, complete genomehypothetical protein1e-1788.6
NC_008009:5044612:505022150502215050451231Acidobacteria bacterium Ellin345, complete genomehypothetical protein5e-1269.7