Pre_GI: BLASTN Hits

Some Help

Query: NC_012668:62500 Vibrio cholerae MJ-1236 chromosome 1, complete sequence

Start: 62500, End: 81242, Length: 18743

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_015851:890068900611859929594Acidithiobacillus caldus SM-1 megaplasmid, complete sequence6e-0763.9BLASTN svgBLASTP svg
NC_015138:1582458*1582458160012917672Acidovorax avenae subsp. avenae ATCC 19860 chromosome, complete2e-1281.8BLASTN svgBLASTP svg
NC_008752:1523768*1523768154381320046Acidovorax avenae subsp. citrulli AAC00-1, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_009053:1668500*1668500169468326184Actinobacillus pleuropneumoniae L20, complete genome2e-71278BLASTN svgBLASTP svg
NC_010939:1633000*1633000166140328404Actinobacillus pleuropneumoniae serovar 7 str. AP76, complete3e-76293BLASTN svgBLASTP svg
NC_013416:1429881*1429881145213822258Aggregatibacter actinomycetemcomitans D11S-1, complete genome2e-74287BLASTN svgBLASTP svg
NC_008260:2340824*2340824238894248119Alcanivorax borkumensis SK2, complete genome8e-34153BLASTN svgBLASTP svg
NC_009850:1011293*1011293103921027918Arcobacter butzleri RM4018, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_010552:752007*75200777809926093Burkholderia ambifaria MC40-6 chromosome 2, complete sequence5e-32147BLASTN svgBLASTP svg
NC_012721:1986436*1986436201260326168Burkholderia glumae BGR1 chromosome 2, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_010086:1907959*1907959194027532317Burkholderia multivorans ATCC 17616 chromosome 2, complete7e-25123BLASTN svgBLASTP svg
NC_010805:530876*53087656144030565Burkholderia multivorans ATCC 17616 chromosome 2, complete7e-25123BLASTN svgBLASTP svg
NC_010676:2869936*2869936289564625711Burkholderia phytofirmans PsJN chromosome 2, complete sequence1e-0765.9BLASTN svgBLASTP svg
NC_009078:2351046*2351046237054119496Burkholderia pseudomallei 1106a chromosome II, complete sequence4e-20107BLASTN svgBLASTP svg
NC_007435:1077792*1077792110044222651Burkholderia pseudomallei 1710b chromosome II, complete sequence2e-22115BLASTN svgBLASTP svg
NC_009075:2428248*2428248244904320796Burkholderia pseudomallei 668 chromosome II, complete sequence2e-1591.7BLASTN svgBLASTP svg
NC_006351:2398403*2398403241919020788Burkholderia pseudomallei K96243 chromosome 2, complete sequence4e-20107BLASTN svgBLASTP svg
NC_014118:2316000*2316000234104325044Burkholderia sp. CCGE1002 chromosome chromosome 2, complete2e-1591.7BLASTN svgBLASTP svg
NC_015947:3991696*3991696401521623521Burkholderia sp. JV3 chromosome, complete genome1e-26129BLASTN svgBLASTP svg
NC_007650:722961*72296174620423244Burkholderia thailandensis E264 chromosome II, complete sequence5e-32147BLASTN svgBLASTP svg
NC_009465:90000*9000013018540186Candidatus Vesicomyosocius okutanii HA, complete genome7e-28133BLASTN svgBLASTP svg
NC_003030:1037885*1037885106609928215Clostridium acetobutylicum ATCC 824, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_015687:1037706*1037706106791230207Clostridium acetobutylicum DSM 1731 chromosome, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_008593:22818962281896230590024005Clostridium novyi NT, complete genome9e-0660BLASTN svgBLASTP svg
NC_015856:1182974*1182974120901726044Collimonas fungivorans Ter331 chromosome, complete genome5e-38167BLASTN svgBLASTP svg
NC_009727:357206*35720637934622141Coxiella burnetii Dugway 7E9-12, complete genome5e-38167BLASTN svgBLASTP svg
NC_002971:1523065*1523065154336920305Coxiella burnetii RSA 493, complete genome5e-38167BLASTN svgBLASTP svg
NC_020260:603796*60379665197748182Cronobacter sakazakii Sp291, complete genome9e-0660BLASTN svgBLASTP svg
NC_014500:84249384249388059638104Dickeya dadantii 3937 chromosome, complete genome9e-0660BLASTN svgBLASTP svg
NC_009952:2381601*2381601241824736647Dinoroseobacter shibae DFL 12, complete genome4e-26127BLASTN svgBLASTP svg
NC_020181:51305135130513517631045798Enterobacter aerogenes EA1509E, complete genome9e-0660BLASTN svgBLASTP svg
NC_015663:770485*77048579596825484Enterobacter aerogenes KCTC 2190 chromosome, complete genome3e-138500BLASTN svgBLASTP svg
NC_014306:64215264215266635524204Erwinia billingiae Eb661, complete genome1e-0765.9BLASTN svgBLASTP svg
CU928145:2973968*2973968299959925632Escherichia coli 55989 chromosome, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_011748:2973968*2973968299959925632Escherichia coli 55989, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_010468:1130000*1130000115350023501Escherichia coli ATCC 8739, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_009801:2898426*2898426294876250337Escherichia coli E24377A, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_009800:2788164*2788164280740719244Escherichia coli HS, complete genome4e-1487.7BLASTN svgBLASTP svg
CU928160:2818750*2818750284490226153Escherichia coli IAI1 chromosome, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_011750:2928990*2928990296940040411Escherichia coli IAI39 chromosome, complete genome9e-1279.8BLASTN svgBLASTP svg
NC_000913:2746886*2746886280151454629Escherichia coli K12, complete genome4e-1487.7BLASTN svgBLASTP svg
AP010958:3853082*3853082389809945018Escherichia coli O103:H2 str. 12009 DNA, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_002655:3538656*3538656358072742072Escherichia coli O157:H7 EDL933, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_002695:3468873*3468873351343744565Escherichia coli O157:H7 str. Sakai, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_010498:2847359*2847359287165924301Escherichia coli SMS-3-5, complete genome9e-1279.8BLASTN svgBLASTP svg
NC_010473:2839902*2839902288978149880Escherichia coli str. K-12 substr. DH10B, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_011751:3048490*3048490309200343514Escherichia coli UMN026 chromosome, complete genome1e-0765.9BLASTN svgBLASTP svg
AC_000091:2747520*2747520280214854629Escherichia coli W3110 DNA, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_007645:6407370*6407370643016222793Hahella chejuensis KCTC 2396, complete genome4e-51210BLASTN svgBLASTP svg
NC_014323:961825*96182598122819404Herbaspirillum seropedicae SmR1 chromosome, complete genome2e-34155BLASTN svgBLASTP svg
NC_007947:2447635*2447635249025042616Methylobacillus flagellatus KT, complete genome1e-35159BLASTN svgBLASTP svg
NC_012968:2228943*2228943225222323281Methylotenera mobilis JLW8, complete genome1e-44188BLASTN svgBLASTP svg
NC_012969:2476318*2476318252045544138Methylovorus glucosetrophus SIP3-4 chromosome, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_014733:2363838*2363838239108027243Methylovorus sp. MP688 chromosome, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_007614:2764848*2764848279529030443Nitrosospira multiformis ATCC 25196 chromosome 1, complete2e-0971.9BLASTN svgBLASTP svg
NC_014837:3739408*3739408376471125304Pantoea sp. At-9b chromosome, complete genome2e-145523BLASTN svgBLASTP svg
NC_006370:84720484720486812520922Photobacterium profundum SS9 chromosome 1, complete sequence2e-0971.9BLASTN svgBLASTP svg
NC_008463:632869*63286965598423116Pseudomonas aeruginosa UCBPP-PA14, complete genome6e-47196BLASTN svgBLASTP svg
NC_015379:6226661*6226661626523538575Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,1e-54222BLASTN svgBLASTP svg
NC_009439:4404942*4404942442988324942Pseudomonas mendocina ymp, complete genome6e-50206BLASTN svgBLASTP svg
NC_009512:469000*46900049317124172Pseudomonas putida F1, complete genome2e-71278BLASTN svgBLASTP svg
NC_015733:443122*44312246159918478Pseudomonas putida S16 chromosome, complete genome7e-59236BLASTN svgBLASTP svg
NC_009434:796878*79687882874331866Pseudomonas stutzeri A1501, complete genome6e-44186BLASTN svgBLASTP svg
NC_007005:5500196*5500196552713626941Pseudomonas syringae pv. syringae B728a, complete genome4e-88333BLASTN svgBLASTP svg
NC_004578:568236*56823659272224487Pseudomonas syringae pv. tomato str. DC3000, complete genome2e-90341BLASTN svgBLASTP svg
NC_007912:909112*90911293451825407Saccharophagus degradans 2-40, complete genome1e-63252BLASTN svgBLASTP svg
NC_008700:312099*31209934171429616Shewanella amazonensis SB2B, complete genome9e-0660BLASTN svgBLASTP svg
NC_009901:15163401516340153887622537Shewanella pealeana ATCC 700345, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_009831:1255995*1255995127895522961Shewanella sediminis HAW-EB3, complete genome2e-136494BLASTN svgBLASTP svg
NC_008577:2115440*2115440215134235903Shewanella sp. ANA-3 chromosome 1, complete sequence9e-0660BLASTN svgBLASTP svg
NC_008750:23320002332000235419622197Shewanella sp. W3-18-1, complete genome9e-0660BLASTN svgBLASTP svg
NC_004741:2741971*2741971276422322253Shigella flexneri 2a str. 2457T, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_004337:2747917*2747917277096123045Shigella flexneri 2a str. 301, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_008258:2905413*2905413292427518863Shigella flexneri 5 str. 8401, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_007384:2933625*2933625295770924085Shigella sonnei Ss046, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_013959:2449315*2449315247282523511Sideroxydans lithotrophicus ES-1 chromosome, complete genome3e-18101BLASTN svgBLASTP svg
NC_015713:2453409*2453409249799944591Simkania negevensis Z chromosome gsn.131, complete genome6e-19103BLASTN svgBLASTP svg
NC_014484:1163576*1163576120142437849Spirochaeta thermophila DSM 6192 chromosome, complete genome9e-0660BLASTN svgBLASTP svg
NC_011071:4000620*4000620403191731298Stenotrophomonas maltophilia R551-3, complete genome5e-29137BLASTN svgBLASTP svg
NC_014623:7331860*7331860735320421345Stigmatella aurantiaca DW4/3-1 chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_010730:952574*95257497119218619Sulfurihydrogenibium sp. YO3AOP1, complete genome9e-0660BLASTN svgBLASTP svg
NC_002505:514732*51473255228437553Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete014630BLASTN svgBLASTP svg
NC_004603:37032037032039589225573Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete2e-0661.9BLASTN svgBLASTP svg
NC_004459:1794540*1794540182011925580Vibrio vulnificus CMCP6 chromosome I, complete sequence6e-0763.9BLASTN svgBLASTP svg
NC_005139:79654679654681991523370Vibrio vulnificus YJ016 chromosome I, complete sequence5e-69270BLASTN svgBLASTP svg
NC_007086:4489153*4489153450718918037Xanthomonas campestris pv. campestris str. 8004, complete genome3e-33151BLASTN svgBLASTP svg
NC_003902:4430621*4430621444960618986Xanthomonas campestris pv. campestris str. ATCC 33913, complete3e-33151BLASTN svgBLASTP svg
NC_007508:4476726*4476726449836521640Xanthomonas campestris pv. vesicatoria str. 85-10, complete genome1e-26129BLASTN svgBLASTP svg
NC_015224:3892972*3892972393636443393Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,2e-145523BLASTN svgBLASTP svg
NC_008149:587689*58768961062122933Yersinia pestis Nepal516, complete genome1e-128468BLASTN svgBLASTP svg
NC_006155:40620004062000408523223233Yersinia pseudotuberculosis IP 32953, complete genome4e-1177.8BLASTN svgBLASTP svg