Pre_GI: BLASTN Hits

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Query: NC_012668:2744393 Vibrio cholerae MJ-1236 chromosome 1, complete sequence

Start: 2744393, End: 2803099, Length: 58707

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_009792:36653693665369370602240654Citrobacter koseri ATCC BAA-895, complete genome8e-21111BLASTN svgBLASTP svg
NC_020291:42465004246500427194125442Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome2e-0663.9BLASTN svgBLASTP svg
NC_014614:2333890*2333890235633822449Clostridium sticklandii, complete genome4e-0765.9BLASTN svgBLASTP svg
NC_020260:603796*60379665197748182Cronobacter sakazakii Sp291, complete genome3e-1799.6BLASTN svgBLASTP svg
NC_012881:964823*96482398847323651Desulfovibrio salexigens DSM 2638, complete genome7e-0661.9BLASTN svgBLASTP svg
NC_014500:89413689413693546441329Dickeya dadantii 3937 chromosome, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_013592:80428880428883459430307Dickeya dadantii Ech586, complete genome7e-0971.9BLASTN svgBLASTP svg
NC_012880:37486653748665378917040506Dickeya dadantii Ech703, complete genome2e-1283.8BLASTN svgBLASTP svg
NC_012912:37491563749156377027021115Dickeya zeae Ech1591, complete genome2e-18103BLASTN svgBLASTP svg
NC_012779:29570002957000298403927040Edwardsiella ictaluri 93-146, complete genome8e-18101BLASTN svgBLASTP svg
NC_013508:2870954*2870954288859917646Edwardsiella tarda EIB202, complete genome8e-18101BLASTN svgBLASTP svg
NC_014121:40431984043198407122728030Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete9e-24121BLASTN svgBLASTP svg
NC_009778:56700056700060530938310Enterobacter sakazakii ATCC BAA-894, complete genome3e-1799.6BLASTN svgBLASTP svg
NC_020063:1051310*1051310108258031271Enterobacteriaceae bacterium strain FGI 57, complete genome2e-21113BLASTN svgBLASTP svg
NC_004547:91355391355395334239790Erwinia carotovora subsp. atroseptica SCRI1043, complete genome5e-1695.6BLASTN svgBLASTP svg
CU928145:2973968*2973968299959925632Escherichia coli 55989 chromosome, complete genome5e-1695.6BLASTN svgBLASTP svg
NC_011748:2973968*2973968299959925632Escherichia coli 55989, complete genome5e-1695.6BLASTN svgBLASTP svg
NC_008563:29099452909945293044120497Escherichia coli APEC O1, complete genome5e-1695.6BLASTN svgBLASTP svg
NC_004431:30126683012668303118918522Escherichia coli CFT073, complete genome5e-1695.6BLASTN svgBLASTP svg
NC_009801:2898426*2898426294876250337Escherichia coli E24377A, complete genome2e-1593.7BLASTN svgBLASTP svg
NC_009800:2788164*2788164280740719244Escherichia coli HS, complete genome5e-1695.6BLASTN svgBLASTP svg
CU928160:2818750*2818750284490226153Escherichia coli IAI1 chromosome, complete genome5e-1695.6BLASTN svgBLASTP svg
NC_011750:2928990*2928990296940040411Escherichia coli IAI39 chromosome, complete genome5e-1695.6BLASTN svgBLASTP svg
NC_000913:2746886*2746886280151454629Escherichia coli K12, complete genome5e-1695.6BLASTN svgBLASTP svg
CP002516:1165726*1165726119130025575Escherichia coli KO11, complete genome5e-1695.6BLASTN svgBLASTP svg
AP010958:32387423238742326213723396Escherichia coli O103:H2 str. 12009 DNA, complete genome5e-1695.6BLASTN svgBLASTP svg
NC_002655:3538656*3538656358072742072Escherichia coli O157:H7 EDL933, complete genome5e-1695.6BLASTN svgBLASTP svg
NC_002695:3468873*3468873351343744565Escherichia coli O157:H7 str. Sakai, complete genome5e-1695.6BLASTN svgBLASTP svg
NC_010498:2847359*2847359287165924301Escherichia coli SMS-3-5, complete genome5e-1695.6BLASTN svgBLASTP svg
NC_010473:2839902*2839902288978149880Escherichia coli str. K-12 substr. DH10B, complete genome5e-1695.6BLASTN svgBLASTP svg
NC_011751:3048490*3048490309200343514Escherichia coli UMN026 chromosome, complete genome5e-1695.6BLASTN svgBLASTP svg
NC_007946:28947932894793291753922747Escherichia coli UTI89, complete genome5e-1695.6BLASTN svgBLASTP svg
CP002185:2919752*2919752294461024859Escherichia coli W, complete genome5e-1695.6BLASTN svgBLASTP svg
AC_000091:2747520*2747520280214854629Escherichia coli W3110 DNA, complete genome5e-1695.6BLASTN svgBLASTP svg
NC_011740:448000*44800047065722658Escherichia fergusonii ATCC 35469, complete genome5e-1695.6BLASTN svgBLASTP svg
NC_009648:32244953224495325660032106Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome8e-21111BLASTN svgBLASTP svg
NC_012559:76893976893979733928401Laribacter hongkongensis HLHK9, complete genome7e-0661.9BLASTN svgBLASTP svg
NC_012559:23095662309566233407924514Laribacter hongkongensis HLHK9, complete genome7e-0661.9BLASTN svgBLASTP svg
NC_015276:56570156570158820522505Marinomonas mediterranea MMB-1 chromosome, complete genome3e-0869.9BLASTN svgBLASTP svg
NC_018876:168207*16820721227744071Methanolobus psychrophilus R15 chromosome, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_012917:83372183372187179538075Pectobacterium carotovorum subsp. carotovorum PC1, complete genome2e-18103BLASTN svgBLASTP svg
NC_006370:768745*76874579247423730Photobacterium profundum SS9 chromosome 1, complete sequence8e-1591.7BLASTN svgBLASTP svg
NC_008228:20686412068641208901520375Pseudoalteromonas atlantica T6c, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_015061:37259213725921375022024300Rahnella sp. Y9602 chromosome, complete genome2e-24123BLASTN svgBLASTP svg
NC_010067:191190*19119023335342164Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete9e-24121BLASTN svgBLASTP svg
NC_006905:28576992857699289909341395Salmonella enterica subsp. enterica serovar Choleraesuis str5e-19105BLASTN svgBLASTP svg
NC_011083:2847318*2847318291739170074Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,1e-1697.6BLASTN svgBLASTP svg
NC_011080:28704282870428289413023703Salmonella enterica subsp. enterica serovar Newport str. SL254,1e-0767.9BLASTN svgBLASTP svg
NC_006511:26779642677964270110823145Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC7e-0661.9BLASTN svgBLASTP svg
NC_003198:44534574453457450773054274Salmonella enterica subsp. enterica serovar Typhi str. CT18,7e-0661.9BLASTN svgBLASTP svg
NC_020064:3609844*3609844365321743374Serratia marcescens FGI94, complete genome2e-21113BLASTN svgBLASTP svg
NC_009999:38832388326239723566Shewanella baltica OS195 plasmid pS19502, complete sequence2e-1593.7BLASTN svgBLASTP svg
NC_009997:40913714091371411415622786Shewanella baltica OS195, complete genome2e-70276BLASTN svgBLASTP svg
NC_009997:72684072684075726930430Shewanella baltica OS195, complete genome5e-1385.7BLASTN svgBLASTP svg
NC_009997:20698942069894209159921706Shewanella baltica OS195, complete genome2e-68270BLASTN svgBLASTP svg
NC_004347:34373693437369345870921341Shewanella oneidensis MR-1, complete genome1e-1387.7BLASTN svgBLASTP svg
NC_004741:2741971*2741971276422322253Shigella flexneri 2a str. 2457T, complete genome5e-1695.6BLASTN svgBLASTP svg
NC_004337:2747917*2747917277096123045Shigella flexneri 2a str. 301, complete genome5e-1695.6BLASTN svgBLASTP svg
NC_008258:2905413*2905413292427518863Shigella flexneri 5 str. 8401, complete genome5e-1695.6BLASTN svgBLASTP svg
NC_013512:126915*12691515204625132Sulfurospirillum deleyianum DSM 6946, complete genome3e-1179.8BLASTN svgBLASTP svg
NC_012691:24762232476223251032334101Tolumonas auensis DSM 9187, complete genome2e-30143BLASTN svgBLASTP svg
NC_015633:29195012919501294340723907Vibrio anguillarum 775 chromosome chromosome I, complete sequence1e-1697.6BLASTN svgBLASTP svg
NC_015633:33800033800035668318684Vibrio anguillarum 775 chromosome chromosome I, complete sequence1e-62250BLASTN svgBLASTP svg
NC_015633:17020001702000172537323374Vibrio anguillarum 775 chromosome chromosome I, complete sequence1e-62250BLASTN svgBLASTP svg
NC_015633:46114346114348763326491Vibrio anguillarum 775 chromosome chromosome I, complete sequence4e-35159BLASTN svgBLASTP svg
NC_015633:2327500*2327500235796830469Vibrio anguillarum 775 chromosome chromosome I, complete sequence6e-34155BLASTN svgBLASTP svg
NC_015637:32556132556134777622216Vibrio anguillarum 775 chromosome chromosome II, complete sequence1e-62250BLASTN svgBLASTP svg
NC_002505:86078986078988990629118Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete024090BLASTN svgBLASTP svg
NC_002505:514732*51473255228437553Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete2e-55226BLASTN svgBLASTP svg
NC_002505:1892430*1892430192509932670Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete0686BLASTN svgBLASTP svg
NC_009783:16656101665610168785322244Vibrio harveyi ATCC BAA-1116 chromosome I, complete sequence2e-77299BLASTN svgBLASTP svg
NC_009784:12317911231791125420022410Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequence8e-52214BLASTN svgBLASTP svg
NC_004605:13854441385444145786672423Vibrio parahaemolyticus RIMD 2210633 chromosome II, complete0878BLASTN svgBLASTP svg
NC_013456:2984491*2984491300234717857Vibrio sp. Ex25 chromosome 1, complete genome2e-108402BLASTN svgBLASTP svg
NC_004459:32439873243987327990435918Vibrio vulnificus CMCP6 chromosome I, complete sequence9e-27131BLASTN svgBLASTP svg
NC_004459:349500*34950040074451245Vibrio vulnificus CMCP6 chromosome I, complete sequence02811BLASTN svgBLASTP svg
NC_004459:20254362025436205524629811Vibrio vulnificus CMCP6 chromosome I, complete sequence3e-1489.7BLASTN svgBLASTP svg
NC_004459:767127*76712778659919473Vibrio vulnificus CMCP6 chromosome I, complete sequence6e-31145BLASTN svgBLASTP svg
NC_004460:12371291237129126309925971Vibrio vulnificus CMCP6 chromosome II, complete sequence01846BLASTN svgBLASTP svg
NC_005139:2201820*2201820227810176282Vibrio vulnificus YJ016 chromosome I, complete sequence1e-65260BLASTN svgBLASTP svg
NC_005139:79654679654681991523370Vibrio vulnificus YJ016 chromosome I, complete sequence02817BLASTN svgBLASTP svg
NC_015224:35875003587500361767930180Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,2e-0973.8BLASTN svgBLASTP svg
NC_010159:14179931417993144109923107Yersinia pestis Angola, complete genome8e-18101BLASTN svgBLASTP svg
NC_008150:65089965089967359922701Yersinia pestis Antiqua, complete genome8e-18101BLASTN svgBLASTP svg
NC_005810:11302511130251115417023920Yersinia pestis biovar Microtus str. 91001, complete genome8e-18101BLASTN svgBLASTP svg
NC_003143:12331281233128125981426687Yersinia pestis CO92, complete genome8e-18101BLASTN svgBLASTP svg
NC_004088:3382148*3382148340611023963Yersinia pestis KIM, complete genome8e-18101BLASTN svgBLASTP svg
NC_008149:3251196*3251196327595124756Yersinia pestis Nepal516, complete genome8e-18101BLASTN svgBLASTP svg
NC_010634:13423931342393136733024938Yersinia pseudotuberculosis PB1/+, complete genome8e-18101BLASTN svgBLASTP svg