Pre_GI: BLASTN Hits

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Query: NC_012668:1036000 Vibrio cholerae MJ-1236 chromosome 1, complete sequence

Start: 1036000, End: 1057099, Length: 21100

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_009925:16174141617414164390926496Acaryochloris marina MBIC11017, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_015942:10475761047576107197424399Acidithiobacillus ferrivorans SS3 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_011992:1505106*1505106152858323478Acidovorax ebreus TPSY, complete genome9e-34153BLASTN svgBLASTP svg
NC_008570:30132633013263304329130029Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome5e-26127BLASTN svgBLASTP svg
NC_015424:26958472695847271872522879Aeromonas veronii B565 chromosome, complete genome1e-26129BLASTN svgBLASTP svg
NC_015422:28068322806832284558938758Alicycliphilus denitrificans K601 chromosome, complete genome3e-30141BLASTN svgBLASTP svg
NC_014166:1424754*1424754147046045707Arcobacter nitrofigilis DSM 7299 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_021150:4311902*4311902433613524234Azotobacter vinelandii CA6, complete genome5e-66260BLASTN svgBLASTP svg
NC_012560:4311906*4311906433613924234Azotobacter vinelandii DJ, complete genome5e-66260BLASTN svgBLASTP svg
NC_002528:148274*14827417635828085Buchnera aphidicola str. APS (Acyrthosiphon pisum), complete1e-1799.6BLASTN svgBLASTP svg
NC_009465:813816*81381684287229057Candidatus Vesicomyosocius okutanii HA, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_005085:43353334335333437106535733Chromobacterium violaceum ATCC 12472, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_007298:219783*21978324447124689Dechloromonas aromatica RCB, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_015161:523278*52327854807924802Deinococcus proteolyticus MRP chromosome, complete genome1e-0560BLASTN svgBLASTP svg
NC_001263:66266666266668995627291Deinococcus radiodurans R1 chromosome 1, complete sequence4e-0867.9BLASTN svgBLASTP svg
NC_014972:10351241035124106227327150Desulfobulbus propionicus DSM 2032 chromosome, complete genome1e-0560BLASTN svgBLASTP svg
NC_013216:39074973907497392759920103Desulfotomaculum acetoxidans DSM 771, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014836:155924*15592417823722314Desulfurispirillum indicum S5 chromosome, complete genome3e-1281.8BLASTN svgBLASTP svg
CU928145:11394*113943596224569Escherichia coli 55989 chromosome, complete genome0872BLASTN svgBLASTP svg
NC_011748:11394*113943596224569Escherichia coli 55989, complete genome0872BLASTN svgBLASTP svg
NC_009801:11921*119213399422074Escherichia coli E24377A, complete genome2e-22115BLASTN svgBLASTP svg
NC_009800:12162*121623729725136Escherichia coli HS, complete genome0880BLASTN svgBLASTP svg
CU928160:11381*113813595024570Escherichia coli IAI1 chromosome, complete genome0785BLASTN svgBLASTP svg
NC_011750:12047*120474221230166Escherichia coli IAI39 chromosome, complete genome2e-151543BLASTN svgBLASTP svg
AP010958:12660*126603398921330Escherichia coli O103:H2 str. 12009 DNA, complete genome2e-22115BLASTN svgBLASTP svg
NC_002695:12000*120003517323174Escherichia coli O157:H7 str. Sakai, complete genome2e-22115BLASTN svgBLASTP svg
NC_011751:12000*120003835526356Escherichia coli UMN026 chromosome, complete genome0837BLASTN svgBLASTP svg
CP002185:11921*119213722925309Escherichia coli W, complete genome0809BLASTN svgBLASTP svg
NC_010336:85291585291587830125387Francisella philomiragia subsp. philomiragia ATCC 25017, complete7e-1383.8BLASTN svgBLASTP svg
NC_006510:14464901446490147285226363Geobacillus kaustophilus HTA426, complete genome1e-0560BLASTN svgBLASTP svg
NC_014915:13760351376035140451428480Geobacillus sp. Y412MC52 chromosome, complete genome1e-0560BLASTN svgBLASTP svg
NC_013411:22361662236166226457028405Geobacillus sp. Y412MC61, complete genome1e-0560BLASTN svgBLASTP svg
NC_011146:22001422200142224285442713Geobacter bemidjiensis Bem, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_006677:2012841*2012841203080417964Gluconobacter oxydans 621H, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_007645:6096345*6096345612066624322Hahella chejuensis KCTC 2396, complete genome7e-19103BLASTN svgBLASTP svg
NC_010524:3094303*3094303311453120229Leptothrix cholodnii SP-6, complete genome2e-53218BLASTN svgBLASTP svg
NC_015559:35112313511231353107519845Marinomonas posidonica IVIA-Po-181 chromosome, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_007947:79745679745682317625721Methylobacillus flagellatus KT, complete genome9e-37163BLASTN svgBLASTP svg
NC_014248:685656*68565670976324108Nostoc azollae 0708 chromosome, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_008781:70881170881173249923689Polaromonas naphthalenivorans CJ2, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_010531:70804970804973271224664Polynucleobacter necessarius STIR1, complete genome2e-22115BLASTN svgBLASTP svg
NC_004129:957890*95789098009922210Pseudomonas fluorescens Pf-5, complete genome1e-79305BLASTN svgBLASTP svg
NC_015410:61702061702063960722588Pseudomonas mendocina NK-01 chromosome, complete genome7e-19103BLASTN svgBLASTP svg
NC_009439:574437*57443759753523099Pseudomonas mendocina ymp, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_009434:60876560876568209973335Pseudomonas stutzeri A1501, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_015740:636667*63666765977523109Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete1e-1799.6BLASTN svgBLASTP svg
NC_012490:43000430006847825479Rhodococcus erythropolis PR4, complete genome1e-0560BLASTN svgBLASTP svg
NC_005296:45742134574213461698142769Rhodopseudomonas palustris CGA009, complete genome1e-23119BLASTN svgBLASTP svg
NC_011004:4947980*4947980497058322604Rhodopseudomonas palustris TIE-1, complete genome2e-22115BLASTN svgBLASTP svg
NC_007912:3403101*3403101342568122581Saccharophagus degradans 2-40, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_004347:71809171809175739939309Shewanella oneidensis MR-1, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_011566:3994239*3994239401970925471Shewanella piezotolerans WP3, complete genome3e-30141BLASTN svgBLASTP svg
NC_008750:3435495*3435495345768522191Shewanella sp. W3-18-1, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_007384:16500*165004120424705Shigella sonnei Ss046, complete genome0896BLASTN svgBLASTP svg
NC_007520:2128178*2128178215364125464Thiomicrospira crunogena XCL-2, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_015385:351393*35139337496623574Treponema succinifaciens DSM 2489 chromosome, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_002505:2537655*2537655256310125447Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete041000BLASTN svgBLASTP svg
NC_011184:2369662*2369662239577126110Vibrio fischeri MJ11 chromosome I, complete sequence3e-0971.9BLASTN svgBLASTP svg