Pre_GI: BLASTP Hits

Some Help

Query: NC_011991:65368:82444 Agrobacterium vitis S4 plasmid pAtS4b, complete sequence

Start: 82444, End: 82893, Length: 450

Host Lineage: Agrobacterium vitis; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Agrobacterium vitis is the causative agent of crown gall disease in grapes. Agrobacterium are Gram-negative, motile, soil-dwelling plant pathogens with the species name given based on the disease phenotype associated with the bacteria. Disease causing Agrobacterium spp. possess a tumor-inducing (Ti) plasmid, which carries genes for the formation of opines. A segment of the Ti plasmid gets transferred to the plant cell and integrates into the host cell genome. The plant cell then starts synthesizing opines, which can be catabolized by Agrobacterium spp, but not by the plant cells.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011884:393328:400526400526400906381Cyanothece sp. PCC 7425, complete genometransposase1e-0962
NC_011884:2422000:242930024293002429662363Cyanothece sp. PCC 7425, complete genometransposase7e-0856.2
NC_010125:1538335:154357915435791543907329Gluconacetobacter diazotrophicus PAl 5, complete genome5e-0650.1
NC_012987:32296:357943579436489696Methylobacterium extorquens DM4 plasmid p1METDI, complete sequence4e-0753.9
NC_012586:897148:903194903194903553360Rhizobium sp. NGR234 plasmid pNGR234b, complete sequenceputative amino-terminus of transposase for insertion sequence NGRIS-7f6e-39159
NC_003911:2540453:255670025567002557140441Silicibacter pomeroyi DSS-3, complete genomeISSpo6, transposase orf A3e-0753.9
NC_014006:63000:789597895979381423Sphingobium japonicum UT26S chromosome 1, complete genomeputative transposase9e-0649.3