Pre_GI: BLASTP Hits

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Query: NC_011982:130199:138220 Agrobacterium vitis S4 plasmid pTiS4, complete sequence

Start: 138220, End: 139356, Length: 1137

Host Lineage: Agrobacterium vitis; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Agrobacterium vitis is the causative agent of crown gall disease in grapes. Agrobacterium are Gram-negative, motile, soil-dwelling plant pathogens with the species name given based on the disease phenotype associated with the bacteria. Disease causing Agrobacterium spp. possess a tumor-inducing (Ti) plasmid, which carries genes for the formation of opines. A segment of the Ti plasmid gets transferred to the plant cell and integrates into the host cell genome. The plant cell then starts synthesizing opines, which can be catabolized by Agrobacterium spp, but not by the plant cells.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003065:27163:5663456634578751242Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequencenopaline synthase2e-99362
NC_003308:1:2323123231244721242Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequenceD-nopaline dehydrogenase2e-99362
NC_007762:88979:9821698216992711056Rhizobium etli CFN 42 plasmid p42a, complete sequenceD-lysopine dehydrogenase/D-octopine dehydrogenase protein1e-1170.9
NC_014011:1264165:1272539127253912736181080Aminobacterium colombiense DSM 12261 chromosome, complete genomeNAD/NADP octopine/nopaline dehydrogenase5e-1065.9