Pre_GI: BLASTN Hits

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Query: NC_011149:2040396 Salmonella enterica subsp. enterica serovar Agona str. SL483,

Start: 2040396, End: 2069296, Length: 28901

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Salmonella enterica subsp. enterica serovar Agona causes gastroenteritis in humans and is also pathogenic to swine and other food animals. This serovar is able to contain the Salmonella genomic island 1 multidrug resistance gene cluster. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_004631:948054*94805498991041857Salmonella enterica subsp. enterica serovar Typhi Ty2, complete05366BLASTN svgBLASTP svg
NC_014121:2514544*2514544255659942056Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete2e-127464BLASTN svgBLASTP svg
NC_013716:2139952*2139952219678356832Citrobacter rodentium ICC168, complete genome6e-122446BLASTN svgBLASTP svg
NC_010468:1816359*1816359186342947071Escherichia coli ATCC 8739, complete genome2e-109404BLASTN svgBLASTP svg
NC_015566:29579562957956297755619601Serratia sp. AS12 chromosome, complete genome2e-75291BLASTN svgBLASTP svg
NC_012880:36453043645304366681221509Dickeya dadantii Ech703, complete genome7e-69270BLASTN svgBLASTP svg
NC_010067:892729*89272992523832510Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete1e-52216BLASTN svgBLASTP svg
NC_007908:4069150*4069150409259123442Rhodoferax ferrireducens T118, complete genome1e-42182BLASTN svgBLASTP svg
NC_009648:34760003476000349829422295Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome8e-35157BLASTN svgBLASTP svg
NC_015663:49500004950000501991769918Enterobacter aerogenes KCTC 2190 chromosome, complete genome2e-32149BLASTN svgBLASTP svg
NC_010087:376918*37691844748870571Burkholderia multivorans ATCC 17616 chromosome 3, complete1e-30143BLASTN svgBLASTP svg
NC_010801:50500050500052310518106Burkholderia multivorans ATCC 17616 chromosome 3, complete1e-30143BLASTN svgBLASTP svg
NC_015663:4906652*4906652493024623595Enterobacter aerogenes KCTC 2190 chromosome, complete genome5e-30141BLASTN svgBLASTP svg
NC_012912:1701231*1701231174963148401Dickeya zeae Ech1591, complete genome5e-30141BLASTN svgBLASTP svg
NC_010515:11242981124298115292928632Burkholderia cenocepacia MC0-3 chromosome 2, complete sequence5e-30141BLASTN svgBLASTP svg
NC_009138:1974935*1974935203606461130Herminiimonas arsenicoxydans, complete genome2e-29139BLASTN svgBLASTP svg
NC_004547:1873390*1873390193737663987Erwinia carotovora subsp. atroseptica SCRI1043, complete genome7e-29137BLASTN svgBLASTP svg
NC_009800:2083465*2083465210667323209Escherichia coli HS, complete genome7e-29137BLASTN svgBLASTP svg
NC_013592:1668092*1668092170683538744Dickeya dadantii Ech586, complete genome3e-28135BLASTN svgBLASTP svg
NC_008344:669498*66949869235322856Nitrosomonas eutropha C91, complete genome4e-27131BLASTN svgBLASTP svg
NC_008344:23747612374761240364328883Nitrosomonas eutropha C91, complete genome4e-27131BLASTN svgBLASTP svg
NC_004741:25930122593012261557622565Shigella flexneri 2a str. 2457T, complete genome4e-27131BLASTN svgBLASTP svg
AC_000091:2027648*2027648207009942452Escherichia coli W3110 DNA, complete genome4e-24121BLASTN svgBLASTP svg
AP010958:2455052*2455052247359918548Escherichia coli O103:H2 str. 12009 DNA, complete genome4e-24121BLASTN svgBLASTP svg
CP002797:2062006*2062006208330121296Escherichia coli NA114, complete genome4e-24121BLASTN svgBLASTP svg
NC_000913:2042935*2042935206659923665Escherichia coli K12, complete genome4e-24121BLASTN svgBLASTP svg
NC_004431:23042802304280233659932320Escherichia coli CFT073, complete genome4e-24121BLASTN svgBLASTP svg
NC_007946:21554542155454218077025317Escherichia coli UTI89, complete genome4e-24121BLASTN svgBLASTP svg
NC_008253:20567342056734207917122438Escherichia coli 536, complete genome4e-24121BLASTN svgBLASTP svg
NC_010473:2119480*2119480215635336874Escherichia coli str. K-12 substr. DH10B, complete genome4e-24121BLASTN svgBLASTP svg
NC_014500:3097362*3097362318793090569Dickeya dadantii 3937 chromosome, complete genome7e-23117BLASTN svgBLASTP svg
NC_013592:2968500*2968500300769039191Dickeya dadantii Ech586, complete genome7e-23117BLASTN svgBLASTP svg
NC_010524:34456413445641346854022900Leptothrix cholodnii SP-6, complete genome3e-22115BLASTN svgBLASTP svg
NC_012559:85450785450789459940093Laribacter hongkongensis HLHK9, complete genome4e-21111BLASTN svgBLASTP svg
NC_007509:366836686033156664Burkholderia sp. 383 chromosome 3, complete sequence4e-21111BLASTN svgBLASTP svg
NC_021066:601029*60102962413023102Raoultella ornithinolytica B6, complete genome3e-19105BLASTN svgBLASTP svg
NC_010681:22141622141624493823523Burkholderia phytofirmans PsJN chromosome 1, complete sequence1e-18103BLASTN svgBLASTP svg
NC_007298:750361*75036177159921239Dechloromonas aromatica RCB, complete genome1e-18103BLASTN svgBLASTP svg
NC_005126:34853303485330350809922770Photorhabdus luminescens subsp. laumondii TTO1, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_003198:4513900*4513900454590232003Salmonella enterica subsp. enterica serovar Typhi str. CT18,6e-1797.6BLASTN svgBLASTP svg
NC_005085:26099342609934263614826215Chromobacterium violaceum ATCC 12472, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_012962:18270001827000184987822879Photorhabdus asymbiotica, complete genome4e-1591.7BLASTN svgBLASTP svg
NC_008253:1938975*1938975200160362629Escherichia coli 536, complete genome4e-1591.7BLASTN svgBLASTP svg
NC_013421:18190361819036185909940064Pectobacterium wasabiae WPP163, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_003143:2137945*2137945217709939155Yersinia pestis CO92, complete genome9e-1383.8BLASTN svgBLASTP svg
NC_004088:2640440*2640440268328342844Yersinia pestis KIM, complete genome9e-1383.8BLASTN svgBLASTP svg
NC_004431:2185750*2185750224915063401Escherichia coli CFT073, complete genome9e-1383.8BLASTN svgBLASTP svg
NC_005810:1794490*1794490183441839929Yersinia pestis biovar Microtus str. 91001, complete genome9e-1383.8BLASTN svgBLASTP svg
NC_006155:1916426*1916426195791941494Yersinia pseudotuberculosis IP 32953, complete genome9e-1383.8BLASTN svgBLASTP svg
NC_008150:1420825*1420825146012739303Yersinia pestis Antiqua, complete genome9e-1383.8BLASTN svgBLASTP svg
NC_010159:21645002164500220861544116Yersinia pestis Angola, complete genome9e-1383.8BLASTN svgBLASTP svg
NC_010634:1916000*1916000195790341904Yersinia pseudotuberculosis PB1/+, complete genome9e-1383.8BLASTN svgBLASTP svg
NC_015572:45767784576778460783531058Methylomonas methanica MC09 chromosome, complete genome9e-1383.8BLASTN svgBLASTP svg
NC_014394:25779492577949260071922771Gallionella capsiferriformans ES-2 chromosome, complete genome4e-1281.8BLASTN svgBLASTP svg
NC_020181:527592*52759257518147590Enterobacter aerogenes EA1509E, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_010170:4800000*48000004908823108824Bordetella petrii, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_009720:43675844367584439276525182Xanthobacter autotrophicus Py2, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_013592:956829*95682998781830990Dickeya dadantii Ech586, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_013421:1696746*1696746172309926354Pectobacterium wasabiae WPP163, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_012912:16707841670784169159920816Dickeya zeae Ech1591, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_011080:1944226*1944226198035236127Salmonella enterica subsp. enterica serovar Newport str. SL254,6e-0867.9BLASTN svgBLASTP svg
NC_011565:469962*46996249376323802Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2,2e-0765.9BLASTN svgBLASTP svg
NC_013421:27205002720500274898028481Pectobacterium wasabiae WPP163, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_010067:3204682*3204682322388819207Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete3e-0661.9BLASTN svgBLASTP svg
NC_004547:3207776*3207776324611038335Erwinia carotovora subsp. atroseptica SCRI1043, complete genome3e-0661.9BLASTN svgBLASTP svg