Pre_GI: BLASTP Hits

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Query: NC_011080:1944226:1952497 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 1952497, End: 1952973, Length: 477

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012731:2083650:209641820964182096903486Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomehypothetical protein5e-0960.1
NC_011149:1236689:124601312460131246489477Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein1e-84311
NC_006905:1961774:197009119700911970567477Salmonella enterica subsp. enterica serovar Choleraesuis strhypothetical protein2e-87320
NC_011205:1391971:141308714130871413563477Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein2e-87320
NC_016831:1690811:169909116990911699567477Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein9e-88321
NC_011083:1993672:200195120019512002427477Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein8e-87318
NC_011147:1057259:108153410815341082010477Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein3e-86316
NC_011094:1923870:193215319321531932629477Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein2e-84310
NC_003198:1867456:187573918757391876215477Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein5e-86315
NC_016832:1090274:110388911038891104365477Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein5e-86315
NC_004631:1091303:110491711049171105393477Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein5e-86315
NC_016860:1943203:195148819514881951964477Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein9e-88321
NC_016810:1903426:191171119117111912187477Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein9e-88321
NC_016856:1957263:196554819655481966024477Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein9e-88321
NC_017046:1902788:191107319110731911549477Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein9e-88321
NC_016857:1903426:191171119117111912187477Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74hypothetical protein9e-88321
NC_016863:1905454:191373919137391914215477Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1hypothetical protein9e-88321
NC_003197:1945858:195414319541431954619477Salmonella typhimurium LT2, complete genomehypothetical protein9e-88321
NC_007712:1954808:195610819561081956554447Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein3e-1580.5