Pre_GI: BLASTP Hits

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Query: NC_011080:1944226:1948904 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 1948904, End: 1949038, Length: 135

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016863:1905454:191007519100751910266192Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative inner membrane lipoprotein1e-1995.5
NC_003197:1945858:195047919504791950670192Salmonella typhimurium LT2, complete genomeputative inner membrane lipoprotein1e-1995.5
NC_016810:1903426:190804719080471908238192Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein1e-1995.5
NC_016856:1957263:196188419618841962075192Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative inner membrane lipoprotein1e-1995.5
NC_016857:1903426:190804719080471908238192Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative inner membrane lipoprotein1e-1995.5
NC_016860:1943203:194782419478241948015192Salmonella enterica subsp. enterica serovar Typhimurium strputative inner membrane lipoprotein1e-1995.5
NC_017046:1902788:190746619074661907600135Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein1e-1995.1
NC_011083:1993672:199834419983441998478135Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein6e-1992.8
NC_011149:1236689:124996212499621250096135Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein6e-1992.8
NC_011205:1391971:141703414170341417168135Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein6e-1992.8
NC_004631:1091303:110886411088641109055192Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative secreted protein5e-1992.8
NC_006905:1961774:196643019664301966621192Salmonella enterica subsp. enterica serovar Choleraesuis strhypothetical protein5e-1992.8
NC_003198:1867456:187207718720771872268192Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative secreted protein5e-1992.8
NC_011094:1923870:192849019284901928681192Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein5e-1992.8
NC_016831:1690811:169542616954261695617192Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein5e-1992.8
NC_016832:1090274:110783611078361108027192Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein5e-1992.8
NC_013421:2306000:232229223222922322483192Pectobacterium wasabiae WPP163, complete genomeprotein of unknown function DUF14821e-1168.6
NC_020064:2779864:279211427921142792305192Serratia marcescens FGI94, complete genomeProtein of unknown function (DUF1482)5e-1166.6
NC_017047:3212000:322686532268653227056192Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein4e-0857
NC_015061:3147691:316226331622633162454192Rahnella sp. Y9602 chromosome, complete genomehypothetical protein4e-0857
NC_016818:3148000:316278731627873162978192Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completehypothetical protein6e-0856.2