Pre_GI: BLASTN Hits

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Query: NC_010673:578474 Borrelia hermsii DAH, complete genome

Start: 578474, End: 602337, Length: 23864

Host Lineage: Borrelia hermsii; Borrelia; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: This strain was isolated from a case of relapsing fever in western Washington, USA. Borrelia hermsii is the causative agent of tick-borne relapsing fever in the western United States and Canada. Borrelia then multiplies rapidly, causing a generalized infection throughout the tick. While feeding, the tick passes the organism into a mammalian host through its infectious saliva. Relapsing fever is characterized by a period of chills, fever, headache, and malaise, an asymptomatic period, followed by another episode of symptoms. This cycle of relapsing is due to changes in the surface proteins of Borrelia, which allow it to avoid detection and removal by the host immune system. This antigenic variation is the result of homologous recombination of silent proteins into an expressed locus, causing partial or complete replacement of one serotype with another. These plasmids carry genes involved in antigenic variation and pathogenicity.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_014166:17519061751906177424122336Arcobacter nitrofigilis DSM 7299 chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_008710:577696*57769660295325258Borrelia turicatae 91E135, complete genome05679BLASTN svgBLASTP svg
NC_004545:96422*9642212057224151Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genome2e-0765.9BLASTN svgBLASTP svg
NC_004545:15650*156506959953950Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genome1e-1179.8BLASTN svgBLASTP svg
NC_010001:21763942176394219780121408Clostridium phytofermentans ISDg, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_004668:1010610*1010610103713326524Enterococcus faecalis V583, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015214:437733*43773348259944867Lactobacillus acidophilus 30SC chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_006814:403723*40372344563241910Lactobacillus acidophilus NCFM, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014724:439594*43959448564446051Lactobacillus amylovorus GRL 1112 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014106:419511*41951145680837298Lactobacillus crispatus ST1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014727:853500*85350087209918600Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,2e-0765.9BLASTN svgBLASTP svg
NC_008530:1551356*1551356158801736662Lactobacillus gasseri ATCC 33323, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010080:445398*44539846977024373Lactobacillus helveticus DPC 4571, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_018528:446610*44661047359926990Lactobacillus helveticus R0052 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_005362:1651767*1651767169076238996Lactobacillus johnsonii NCC 533, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015602:117939*11793915324635308Lactobacillus kefiranofaciens ZW3 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_004344:589375*58937561664427270Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis,7e-0763.9BLASTN svgBLASTP svg