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Query: NC_010572:802269 Streptomyces griseus subsp. griseus NBRC 13350, complete genome

Start: 802269, End: 828593, Length: 26325

Host Lineage: Streptomyces griseus; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Soil bacterium producing an antituberculosis agent. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_003888:7028165*7028165706572937565Streptomyces coelicolor A3(2), complete genome0708BLASTN svgBLASTP svg
NC_015951:46000460007890132902Streptomyces violaceusniger Tu 4113 plasmid pSTRVI01, complete2e-152547BLASTN svgBLASTP svg
NC_003888:86138488613848863240818561Streptomyces coelicolor A3(2), complete genome3e-142513BLASTN svgBLASTP svg
NC_018750:65882066588206661440326198Streptomyces venezuelae ATCC 10712, complete genome1e-101379BLASTN svgBLASTP svg
NC_009921:39990403999040401805519016Frankia sp. EAN1pec, complete genome5e-51210BLASTN svgBLASTP svg
NC_013093:2633000*2633000269098057981Actinosynnema mirum DSM 43827, complete genome1e-45192BLASTN svgBLASTP svg
NC_008278:874015*87401590122927215Frankia alni ACN14a, complete genome4e-21111BLASTN svgBLASTP svg
NC_008340:22726922272692229766424973Alkalilimnicola ehrlichei MLHE-1, complete genome1e-20109BLASTN svgBLASTP svg
NC_002939:26170372617037264347926443Geobacter sulfurreducens PCA, complete genome6e-1797.6BLASTN svgBLASTP svg
NC_010172:1079127*1079127112780848682Methylobacterium extorquens PA1, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_012808:806432*80643283135724926Methylobacterium extorquens AM1, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_013757:1888850*1888850193149042641Geodermatophilus obscurus DSM 43160, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_013510:3065000*3065000309079525796Thermomonospora curvata DSM 43183, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_014924:33343863334386336113526750Pseudoxanthomonas suwonensis 11-1 chromosome, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_003919:29564042956404297807421671Xanthomonas axonopodis pv. citri str. 306, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_007404:11267561126756114893922184Thiobacillus denitrificans ATCC 25259, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_011757:1146608*1146608117421827611Methylobacterium chloromethanicum CM4, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_010725:1003760*1003760103039426635Methylobacterium populi BJ001, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_015873:22600482260048228220422157Megasphaera elsdenii DSM 20460, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_007508:30656213065621309125825638Xanthomonas campestris pv. vesicatoria str. 85-10, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_011206:26854992685499274159956101Acidithiobacillus ferrooxidans ATCC 53993, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_008752:4747376*4747376477161024235Acidovorax avenae subsp. citrulli AAC00-1, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_014363:13447681344768137015325386Olsenella uli DSM 7084 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_008570:2768795*2768795279764928855Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_013595:52213305221330524437223043Streptosporangium roseum DSM 43021, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_009348:18932921893292191741424123Aeromonas salmonicida subsp. salmonicida A449, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_010688:20526192052619207639423776Xanthomonas campestris pv. campestris, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_014836:26208712620871264366422794Desulfurispirillum indicum S5 chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_013131:3473843*3473843349585522013Catenulispora acidiphila DSM 44928, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010337:1*14268242682Heliobacterium modesticaldum Ice1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014218:1163513*1163513118653823026Arcanobacterium haemolyticum DSM 20595 chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_010814:2275199*2275199231536040162Geobacter lovleyi SZ, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_009092:25890002589000261518626187Shewanella loihica PV-4, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_002929:52500*525008147528976Bordetella pertussis Tohama I, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_002928:507749*50774956809960351Bordetella parapertussis 12822, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_002927:506183*50618356896162779Bordetella bronchiseptica RB50, complete genome3e-0661.9BLASTN svgBLASTP svg