Pre_GI: BLASTN Hits

Some Help

Query: NC_010572:1748668 Streptomyces griseus subsp. griseus NBRC 13350, complete genome

Start: 1748668, End: 1769207, Length: 20540

Host Lineage: Streptomyces griseus; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Soil bacterium producing an antituberculosis agent. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_014218:88211888211890872426607Arcanobacterium haemolyticum DSM 20595 chromosome, complete genome3e-27131BLASTN svgBLASTP svg
NC_013172:2647716*2647716267284725132Brachybacterium faecium DSM 4810, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_012721:24068742406874243009923226Burkholderia glumae BGR1 chromosome 2, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_012721:979656979656100222522570Burkholderia glumae BGR1 chromosome 2, complete genome5e-26127BLASTN svgBLASTP svg
NC_013131:7401253*7401253742304021788Catenulispora acidiphila DSM 44928, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_013739:5705325*5705325573909933775Conexibacter woesei DSM 14684, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_002935:1237585*1237585131159974015Corynebacterium diphtheriae NCTC 13129, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_014329:11696741169674119345823785Corynebacterium pseudotuberculosis FRC41 chromosome, complete2e-25125BLASTN svgBLASTP svg
NC_015683:12707821270782129415323372Corynebacterium ulcerans BR-AD22 chromosome, complete genome7e-19103BLASTN svgBLASTP svg
NC_008025:17687561768756179085022095Deinococcus geothermalis DSM 11300, complete genome5e-20107BLASTN svgBLASTP svg
NC_009921:85497578549757862261572859Frankia sp. EAN1pec, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_013440:91465629146562916950022939Haliangium ochraceum DSM 14365, complete genome1e-54222BLASTN svgBLASTP svg
NC_007626:3996000*3996000401964723648Magnetospirillum magneticum AMB-1, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_002678:70043707004370703428029911Mesorhizobium loti MAFF303099, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014246:1991093*1991093201986028768Mobiluncus curtisii ATCC 43063 chromosome, complete genome2e-31145BLASTN svgBLASTP svg
NC_014315:14352431435243145679721555Nitrosococcus watsoni C-113 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_014210:16259541625954164519219239Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,2e-50208BLASTN svgBLASTP svg
NC_008687:22994122994125509925159Paracoccus denitrificans PD1222 chromosome 2, complete sequence3e-0971.9BLASTN svgBLASTP svg
NC_016002:25345162534516255550820993Pseudogulbenkiania sp. NH8B, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_007005:40623114062311408347221162Pseudomonas syringae pv. syringae B728a, complete genome2e-40174BLASTN svgBLASTP svg
NC_004578:21859072185907220851022604Pseudomonas syringae pv. tomato str. DC3000, complete genome3e-30141BLASTN svgBLASTP svg
NC_012522:3867167*3867167389736130195Rhodococcus opacus B4, complete genome8e-65256BLASTN svgBLASTP svg
NC_013715:1376985*1376985140051523531Rothia mucilaginosa DY-18, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_019673:67784016778401680115922759Saccharothrix espanaensis DSM 44229 complete genome2e-0661.9BLASTN svgBLASTP svg
NC_019673:8161242*8161242818734226101Saccharothrix espanaensis DSM 44229 complete genome4e-85323BLASTN svgBLASTP svg
NC_013521:16193941619394164259923206Sanguibacter keddieii DSM 10542, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_003155:27304692730469275024819780Streptomyces avermitilis MA-4680, complete genome02006BLASTN svgBLASTP svg
NC_003888:65680006568000659069022691Streptomyces coelicolor A3(2), complete genome03620BLASTN svgBLASTP svg
NC_003888:40312994031299405409922801Streptomyces coelicolor A3(2), complete genome2e-37165BLASTN svgBLASTP svg
NC_021177:66626686662668668358820921Streptomyces fulvissimus DSM 40593, complete genome05644BLASTN svgBLASTP svg
NC_015953:59084675908467592977521309Streptomyces sp. SirexAA-E chromosome, complete genome03025BLASTN svgBLASTP svg
NC_015953:46732467328409937368Streptomyces sp. SirexAA-E chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_015953:58657335865733590682141089Streptomyces sp. SirexAA-E chromosome, complete genome04454BLASTN svgBLASTP svg
NC_018750:63158026315802633862022819Streptomyces venezuelae ATCC 10712, complete genome04018BLASTN svgBLASTP svg
NC_013595:3541012*3541012356209921088Streptosporangium roseum DSM 43021, complete genome1e-75291BLASTN svgBLASTP svg
NC_006461:95381795381797653122715Thermus thermophilus HB8, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_014221:16999616999619527425279Truepera radiovictrix DSM 17093 chromosome, complete genome2e-31145BLASTN svgBLASTP svg