Pre_GI: BLASTP Hits

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Query: NC_010572:4024810:4028821 Streptomyces griseus subsp. griseus NBRC 13350, complete genome

Start: 4028821, End: 4029798, Length: 978

Host Lineage: Streptomyces griseus; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Soil bacterium producing an antituberculosis agent. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015953:3456535:346392834639283464851924Streptomyces sp. SirexAA-E chromosome, complete genomehypothetical protein5e-92337
NC_018750:3741581:375539637553963756307912Streptomyces venezuelae ATCC 10712, complete genomeputative integral membrane protein1e-73276
NC_003155:5443230:5459306545930654603191014Streptomyces avermitilis MA-4680, complete genomehypothetical protein5e-70264
NC_013929:4807910:480791048079104808860951Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein8e-69260
NC_016111:3486000:349468834946883495452765Streptomyces cattleya NRRL 8057, complete genomeIntegral membrane protein (fragment)9e-62237
NC_016109:4241591:424256842425684243560993Kitasatospora setae KM-6054, complete genomehypothetical protein4e-35148