Query: NC_010407:1114408 Clavibacter michiganensis subsp. sepedonicus chromosome, complete
Start: 1114408, End: 1138946, Length: 24539
Host Lineage: Clavibacter michiganensis; Clavibacter; Microbacteriaceae; Actinomycetales; Actinobacteria; Bacteria
General Information: Causative agent of bacterial ring rot. Isolated from infected potato. This organism was first described and classified in 1914 as "Bacterium sepedonicus" and is considered a major plant pathogen. It is a phytopathogenic actinomycete that causes wilt and tuber rot in potato, which is a plant vascular disease with very high bacterial titers. Pathogenicity is believed to be associated with the presence of two plasmids, pCSL1 and pCSL2. This species is subdivided into five subspecies: michiganensis, sepedonicus, nebraskensis, tesselarius and insidiosus each of which infects specific hosts: tomato, potato, corn, wheat and alfalfa, respectively. Members of the Clavibacter genus are known to produce antimicrobial compounds.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_008538:46469 | 46469 | 66099 | 19631 | Arthrobacter sp. FB24 plasmid 2, complete sequence | 3e-15 | 91.7 | BLASTN svg | BLASTP svg |
NC_015514:477935 | 477935 | 500795 | 22861 | Cellulomonas fimi ATCC 484 chromosome, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_015514:181773 | 181773 | 205349 | 23577 | Cellulomonas fimi ATCC 484 chromosome, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_010407:2406113 | 2406113 | 2424999 | 18887 | Clavibacter michiganensis subsp. sepedonicus chromosome, complete | 5e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_010407:2038499 | 2038499 | 2056747 | 18249 | Clavibacter michiganensis subsp. sepedonicus chromosome, complete | 5e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_010407:151599* | 151599 | 175589 | 23991 | Clavibacter michiganensis subsp. sepedonicus chromosome, complete | 5e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_010407:410918 | 410918 | 435272 | 24355 | Clavibacter michiganensis subsp. sepedonicus chromosome, complete | 5e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_010407:32960* | 32960 | 51633 | 18674 | Clavibacter michiganensis subsp. sepedonicus chromosome, complete | 5e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_010407:3174470 | 3174470 | 3197545 | 23076 | Clavibacter michiganensis subsp. sepedonicus chromosome, complete | 5e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_010407:3132683 | 3132683 | 3154890 | 22208 | Clavibacter michiganensis subsp. sepedonicus chromosome, complete | 5e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_010399:13222 | 13222 | 35599 | 22378 | Clavibacter michiganensis subsp. sepedonicus plasmid pCS1, complete | 5e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_010545:1781393* | 1781393 | 1807973 | 26581 | Corynebacterium urealyticum DSM 7109, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_013757:3753241 | 3753241 | 3779713 | 26473 | Geodermatophilus obscurus DSM 43160, complete genome | 5e-20 | 107 | BLASTN svg | BLASTP svg |
NC_018581:759932 | 759932 | 801242 | 41311 | Gordonia sp. KTR9 chromosome, complete genome | 2e-16 | 95.6 | BLASTN svg | BLASTP svg |
NC_013729:4978401 | 4978401 | 5002655 | 24255 | Kribbella flavida DSM 17836, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_013169:87269 | 87269 | 110609 | 23341 | Kytococcus sedentarius DSM 20547, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_006087:345976* | 345976 | 405679 | 59704 | Leifsonia xyli subsp. xyli str. CTCB07, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_006087:237500 | 237500 | 264629 | 27130 | Leifsonia xyli subsp. xyli str. CTCB07, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_006087:2326143 | 2326143 | 2354219 | 28077 | Leifsonia xyli subsp. xyli str. CTCB07, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_006087:28490* | 28490 | 75671 | 47182 | Leifsonia xyli subsp. xyli str. CTCB07, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_015125:1136734* | 1136734 | 1162529 | 25796 | Microbacterium testaceum StLB037, complete genome | 5e-14 | 87.7 | BLASTN svg | BLASTP svg |
NC_015125:3284095 | 3284095 | 3308099 | 24005 | Microbacterium testaceum StLB037, complete genome | 8e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_018524:2338000* | 2338000 | 2363069 | 25070 | Nocardiopsis alba ATCC BAA-2165 chromosome, complete genome | 5e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_014215:2259290 | 2259290 | 2283205 | 23916 | Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1, | 5e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_019673:6394319 | 6394319 | 6461357 | 67039 | Saccharothrix espanaensis DSM 44229 complete genome | 2e-25 | 125 | BLASTN svg | BLASTP svg |
NC_003888:8613848 | 8613848 | 8632408 | 18561 | Streptomyces coelicolor A3(2), complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_003888:6103534* | 6103534 | 6155446 | 51913 | Streptomyces coelicolor A3(2), complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_003888:56225 | 56225 | 90043 | 33819 | Streptomyces coelicolor A3(2), complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_003888:5114147* | 5114147 | 5152157 | 38011 | Streptomyces coelicolor A3(2), complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_015953:2512152 | 2512152 | 2536762 | 24611 | Streptomyces sp. SirexAA-E chromosome, complete genome | 1e-20 | 109 | BLASTN svg | BLASTP svg |
NC_015957:2726816 | 2726816 | 2751236 | 24421 | Streptomyces violaceusniger Tu 4113 chromosome, complete genome | 3e-18 | 101 | BLASTN svg | BLASTP svg |
NC_013510:675368 | 675368 | 699746 | 24379 | Thermomonospora curvata DSM 43183, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |