Pre_GI: BLASTN Hits

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Query: NC_010407:1114408 Clavibacter michiganensis subsp. sepedonicus chromosome, complete

Start: 1114408, End: 1138946, Length: 24539

Host Lineage: Clavibacter michiganensis; Clavibacter; Microbacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Causative agent of bacterial ring rot. Isolated from infected potato. This organism was first described and classified in 1914 as "Bacterium sepedonicus" and is considered a major plant pathogen. It is a phytopathogenic actinomycete that causes wilt and tuber rot in potato, which is a plant vascular disease with very high bacterial titers. Pathogenicity is believed to be associated with the presence of two plasmids, pCSL1 and pCSL2. This species is subdivided into five subspecies: michiganensis, sepedonicus, nebraskensis, tesselarius and insidiosus each of which infects specific hosts: tomato, potato, corn, wheat and alfalfa, respectively. Members of the Clavibacter genus are known to produce antimicrobial compounds.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_008538:46469464696609919631Arthrobacter sp. FB24 plasmid 2, complete sequence3e-1591.7BLASTN svgBLASTP svg
NC_015514:47793547793550079522861Cellulomonas fimi ATCC 484 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_015514:18177318177320534923577Cellulomonas fimi ATCC 484 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_010407:41091841091843527224355Clavibacter michiganensis subsp. sepedonicus chromosome, complete5e-1177.8BLASTN svgBLASTP svg
NC_010407:32960*329605163318674Clavibacter michiganensis subsp. sepedonicus chromosome, complete5e-1177.8BLASTN svgBLASTP svg
NC_010407:31744703174470319754523076Clavibacter michiganensis subsp. sepedonicus chromosome, complete5e-1177.8BLASTN svgBLASTP svg
NC_010407:31326833132683315489022208Clavibacter michiganensis subsp. sepedonicus chromosome, complete5e-1177.8BLASTN svgBLASTP svg
NC_010407:24061132406113242499918887Clavibacter michiganensis subsp. sepedonicus chromosome, complete5e-1177.8BLASTN svgBLASTP svg
NC_010407:20384992038499205674718249Clavibacter michiganensis subsp. sepedonicus chromosome, complete5e-1177.8BLASTN svgBLASTP svg
NC_010407:151599*15159917558923991Clavibacter michiganensis subsp. sepedonicus chromosome, complete5e-1177.8BLASTN svgBLASTP svg
NC_010399:13222132223559922378Clavibacter michiganensis subsp. sepedonicus plasmid pCS1, complete5e-1177.8BLASTN svgBLASTP svg
NC_010545:1781393*1781393180797326581Corynebacterium urealyticum DSM 7109, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013757:37532413753241377971326473Geodermatophilus obscurus DSM 43160, complete genome5e-20107BLASTN svgBLASTP svg
NC_018581:75993275993280124241311Gordonia sp. KTR9 chromosome, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_013729:49784014978401500265524255Kribbella flavida DSM 17836, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_013169:872698726911060923341Kytococcus sedentarius DSM 20547, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_006087:345976*34597640567959704Leifsonia xyli subsp. xyli str. CTCB07, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_006087:23750023750026462927130Leifsonia xyli subsp. xyli str. CTCB07, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_006087:23261432326143235421928077Leifsonia xyli subsp. xyli str. CTCB07, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_006087:28490*284907567147182Leifsonia xyli subsp. xyli str. CTCB07, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_015125:1136734*1136734116252925796Microbacterium testaceum StLB037, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_015125:32840953284095330809924005Microbacterium testaceum StLB037, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_018524:2338000*2338000236306925070Nocardiopsis alba ATCC BAA-2165 chromosome, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_014215:22592902259290228320523916Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1,5e-1177.8BLASTN svgBLASTP svg
NC_019673:63943196394319646135767039Saccharothrix espanaensis DSM 44229 complete genome2e-25125BLASTN svgBLASTP svg
NC_003888:86138488613848863240818561Streptomyces coelicolor A3(2), complete genome7e-0763.9BLASTN svgBLASTP svg
NC_003888:6103534*6103534615544651913Streptomyces coelicolor A3(2), complete genome7e-0763.9BLASTN svgBLASTP svg
NC_003888:56225562259004333819Streptomyces coelicolor A3(2), complete genome7e-0763.9BLASTN svgBLASTP svg
NC_003888:5114147*5114147515215738011Streptomyces coelicolor A3(2), complete genome7e-0763.9BLASTN svgBLASTP svg
NC_015953:25121522512152253676224611Streptomyces sp. SirexAA-E chromosome, complete genome1e-20109BLASTN svgBLASTP svg
NC_015957:27268162726816275123624421Streptomyces violaceusniger Tu 4113 chromosome, complete genome3e-18101BLASTN svgBLASTP svg
NC_013510:67536867536869974624379Thermomonospora curvata DSM 43183, complete genome3e-0971.9BLASTN svgBLASTP svg