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Query: NC_010322:4623867 Pseudomonas putida GB-1 chromosome, complete genome

Start: 4623867, End: 4672599, Length: 48733

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_020209:945000*94500096809923100Pseudomonas poae RE*1-1-14, complete genome01031BLASTN svgBLASTP svg
NC_014323:4792048*4792048483609944052Herbaspirillum seropedicae SmR1 chromosome, complete genome0785BLASTN svgBLASTP svg
NC_010501:26095672609567264709937533Pseudomonas putida W619, complete genome3e-69272BLASTN svgBLASTP svg
NC_002947:49943354994335504935655022Pseudomonas putida KT2440, complete genome7e-64254BLASTN svgBLASTP svg
NC_002947:41675004167500424373376234Pseudomonas putida KT2440, complete genome6e-52214BLASTN svgBLASTP svg
NC_009439:3394174*3394174341925525082Pseudomonas mendocina ymp, complete genome3e-29139BLASTN svgBLASTP svg
NC_020064:15014411501441151984318403Serratia marcescens FGI94, complete genome1e-25127BLASTN svgBLASTP svg
NC_010501:4379920*4379920440315523236Pseudomonas putida W619, complete genome2e-24123BLASTN svgBLASTP svg
NC_015410:37010003701000372390022901Pseudomonas mendocina NK-01 chromosome, complete genome1e-19107BLASTN svgBLASTP svg
NC_010501:4311873*4311873433434022468Pseudomonas putida W619, complete genome2e-18103BLASTN svgBLASTP svg
NC_007974:78521678521680824923034Ralstonia metallidurans CH34 chromosome 2, complete sequence3e-1799.6BLASTN svgBLASTP svg
NC_014838:17593917593920509029152Pantoea sp. At-9b plasmid pPAT9B01, complete sequence4e-1695.6BLASTN svgBLASTP svg
NC_010501:3987615*3987615401756729953Pseudomonas putida W619, complete genome4e-1695.6BLASTN svgBLASTP svg
NC_015856:24882972488297252114632850Collimonas fungivorans Ter331 chromosome, complete genome4e-1385.7BLASTN svgBLASTP svg
NC_007005:1738500*1738500176475226253Pseudomonas syringae pv. syringae B728a, complete genome6e-1281.8BLASTN svgBLASTP svg
NC_015740:45083754508375452814119767Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete2e-1179.8BLASTN svgBLASTP svg
NC_004578:44329834432983445709924117Pseudomonas syringae pv. tomato str. DC3000, complete genome2e-0973.8BLASTN svgBLASTP svg
NC_012214:12433712433714380319467Erwinia pyrifoliae Ep1/96, complete genome9e-0867.9BLASTN svgBLASTP svg
NC_009512:22384372238437226259924163Pseudomonas putida F1, complete genome4e-0765.9BLASTN svgBLASTP svg
NC_010694:19321261932126195650024375Erwinia tasmaniensis, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_011770:3735162*3735162376383628675Pseudomonas aeruginosa LESB58, complete genome6e-0661.9BLASTN svgBLASTP svg