Pre_GI: BLASTP Hits

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Query: NC_010322:1336231:1349044 Pseudomonas putida GB-1 chromosome, complete genome

Start: 1349044, End: 1351806, Length: 2763

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017986:4091051:4104012410401241067712760Pseudomonas putida ND6 chromosome, complete genomebifunctional DNA primase/polymerase01513
NC_015733:1943385:1957247195724719587521506Pseudomonas putida S16 chromosome, complete genome0854
NC_015733:1943385:1955962195596219572421281Pseudomonas putida S16 chromosome, complete genome7e-142505
NC_017506:2089769:2093414209341420949971584Marinobacter adhaerens HP15 chromosome, complete genomehypothetical protein2e-109397
NC_015856:3912195:3940210394021039427262517Collimonas fungivorans Ter331 chromosome, complete genomehypothetical protein1e-89332
NC_013722:218847:2332592332592357272469Xanthomonas albilineans, complete genomehypothetical protein1e-49199
NC_001263:531188:5311885311885338632676Deinococcus radiodurans R1 chromosome 1, complete sequencehypothetical protein8e-30133
NC_020409:1173796:1177914117791411796381725Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completehypothetical protein4e-1480.9
NC_015942:1047576:106463510646351065573939Acidithiobacillus ferrivorans SS3 chromosome, complete genomehypothetical protein6e-1480.1
NC_015259:1803266:1805241180524118075802340Polymorphum gilvum SL003B-26A1 chromosome, complete genomeGp335e-1377.4
NC_014844:511552:5124675124675139481482Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomehypothetical protein6e-1377
NC_015590:1425628:1433604143360414360242421Sinorhizobium meliloti AK83 chromosome 1, complete sequenceprimase 22e-1275.1
NC_016803:3502749:3523289352328935247821494Desulfovibrio desulfuricans ND132 chromosome, complete genomehypothetical protein4e-1274.3
NC_014539:1839840:1848488184848818511302643Burkholderia sp. CCGE1003 chromosome 1, complete sequencehypothetical protein1e-1172.8
NC_011883:2680380:2695025269502526966051581Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,hypothetical protein1e-1172.8
NC_021172:3655206:3674302367430236767522451Hyphomicrobium denitrificans 1NES1, complete genomehypothetical protein5e-1067.4
NC_015593:2103815:2115421211542121175052085Sphingobium chlorophenolicum L-1 chromosome chromosome 1, completeBifunctional DNA primase/polymerase1e-0965.9
NC_020911:4465500:4478211447821144802172007Octadecabacter antarcticus 307, complete genomehypothetical protein5e-0860.8
NC_015731:1578106:1596847159684715994592613Nitrosomonas sp. Is79A3 chromosome, complete genomehypothetical protein7e-0860.1
NC_017082:532000:5324275324275338361410Bradyrhizobium sp. S23321, complete genomehypothetical protein3e-0758.2
NC_002678:341996:3554813554813578232343Mesorhizobium loti MAFF303099, complete genomehypothetical protein5e-0757.4
NC_007760:2094746:2099997209999721022522256Anaeromyxobacter dehalogenans 2CP-C, complete genomehypothetical protein1e-0655.8
NC_007964:2762000:2776680277668027789502271Nitrobacter hamburgensis X14, complete genomehypothetical protein2e-0655.5