Some Help

Query: NC_010322:1336231:1348009 Pseudomonas putida GB-1 chromosome, complete genome

Start: 1348009, End: 1348233, Length: 225

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.

Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia

SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009255:1344000:135603413560341356318285Burkholderia vietnamiensis G4 chromosome 2, complete sequencehypothetical protein5e-0753.1
NC_012759:1296000:131044813104481310744297Escherichia coli BW2952 chromosome, complete genomeRac prophage; putative DNA-binding transcriptional regulator9e-0752.4
AC_000091:1407693:142207914220791422375297Escherichia coli W3110 DNA, complete genomepredicted DNA-binding transcriptional regulator9e-0752.4
NC_010473:1493983:150778515077851508081297Escherichia coli str. K-12 substr. DH10B, complete genomeRac prophage; predicted DNA-binding transcriptional regulator9e-0752.4
NC_000913:1404000:141838914183891418685297Escherichia coli K12, complete genomeRac prophage; predicted DNA-binding transcriptional regulator9e-0752.4