Pre_GI: BLASTP Hits

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Query: NC_009882:100000:103276 Rickettsia rickettsii str. 'Sheila Smith', complete genome

Start: 103276, End: 104160, Length: 885

Host Lineage: Rickettsia rickettsii; Rickettsia; Rickettsiaceae; Rickettsiales; Proteobacteria; Bacteria

General Information: This strain was isolated from from a patient with Rocky Mountain spotted fever. Causative agent for Rocky Mountain Spotted Fever. This genus, like other Rickettsial organisms such as Neorickettsia and Anaplasma, are obligate intracellular pathogens and is composed of two groups, the spotted fever group, and the typhus group. The latter is composed of two organisms, Rickettsia prowazekii and Rickettsia typhi. The bacteria are transmitted via an insect, usually a tick, to a host organism, in this case humans, where they target endothelial cells and sometimes macrophages. They attach via an adhesin, rickettsial outer membrane protein A, and are internalized where they persist as cytoplasmically free organisms. Rickettsia rickettsii was first identified by Dr. Howard Rickets as the causative agent of Rocky Mountain Spotted Fever, which was originally named for its geographic distribution at the time, it is now known to be widespread throughout the North American continent. This bacterium is an obligate intracellular pathogen that infects primarily the vascular endothelium, and occasionally smooth muscle tissue. This bacterium is an obligate intracellular pathogen that infects primarily the vascular endothelium, and occasionally smooth muscle tissue. It is passed to the human host from a tick bite, and the tick acts as both a natural reservoir and a vector for disease transmission. Once the organism is endocytosed by the host cell, it quickly escapes the phagozome, and replicates intracellularly, causing cell death and tissue damage. The disease is characterized by a spotted rash and has a high mortality rate if left untreated.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016914:99184:103362103362104246885Rickettsia rickettsii str. Hino chromosome, complete genometransporter, drug/metabolite exporter family protein2e-144511
NC_016909:100000:103304103304104188885Rickettsia rickettsii str. Arizona chromosome, complete genometransporter, drug/metabolite exporter family protein2e-144511
NC_016908:100000:103309103309104193885Rickettsia rickettsii str. Colombia chromosome, complete genometransporter, drug/metabolite exporter family protein2e-144511
NC_010263:100000:103275103275104159885Rickettsia rickettsii str. Iowa, complete genometransporter, drug/metabolite exporter family2e-144511
NC_012633:98000:101101101101101985885Rickettsia africae ESF-5, complete genomeS-adenosylmethionine transporter4e-142503
NC_017058:129474:132593132593133477885Rickettsia australis str. Cutlack chromosome, complete genomeS-adenosylmethionine transporter3e-136484
NC_009881:92929:971789717898062885Rickettsia akari str. Hartford, complete genomeS-adenosylmethionine transporter7e-136483
NC_000963:83408:857838578386667885Rickettsia prowazekii str. Madrid E, complete genomehypothetical protein4e-130464
NC_017050:83406:857818578186665885Rickettsia prowazekii str. Katsinyian chromosome, complete genomehypothetical protein4e-130464
NC_017056:86663:857928579286676885Rickettsia prowazekii str. BuV67-CWPP chromosome, complete genomehypothetical protein4e-130464
NC_017057:83415:857908579086674885Rickettsia prowazekii str. RpGvF24 chromosome, complete genomehypothetical protein4e-130464
NC_017066:57571:749877498775871885Rickettsia typhi str. TH1527 chromosome, complete genomehypothetical protein4e-127454
NC_017062:61500:754047540476288885Rickettsia typhi str. B9991CWPP chromosome, complete genomehypothetical protein4e-127454
NC_006142:57571:749877498775871885Rickettsia typhi str. Wilmington, complete genomehypothetical protein4e-127454
NC_009488:186000:186178186178187050873Orientia tsutsugamushi str. Boryong, complete genomepermeases-like integral membrane protein7e-60230
NC_010793:1811401:181216718121671813039873Orientia tsutsugamushi str. Ikeda, complete genomehypothetical protein7e-60230
NC_014364:2751662:275726727572672758211945Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeprotein of unknown function DUF6 transmembrane5e-1995.1
NC_010688:2850164:287009128700912871002912Xanthomonas campestris pv. campestris, complete genomeDrug/metabolite transporter superfamily protein,probable1e-1790.9
NC_007086:2887875:296390529639052964816912Xanthomonas campestris pv. campestris str. 8004, complete genomeintegral membrane protein1e-1790.9
NC_016147:2266419:226879922687992269710912Pseudoxanthomonas spadix BD-a59 chromosome, complete genomedrug/metabolite transporter superfamily protein1e-1790.5
NC_002947:4167500:417124041712404172118879Pseudomonas putida KT2440, complete genomehypothetical protein2e-1686.7
NC_017047:2957957:297555329755532976473921Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein4e-1582
NC_015061:2927707:294530329453032946223921Rahnella sp. Y9602 chromosome, complete genomehypothetical protein4e-1582
NC_009720:2143124:215612621561262157040915Xanthobacter autotrophicus Py2, complete genomehypothetical protein1e-1480.9
NC_003910:4234000:426017342601734261126954Colwellia psychrerythraea 34H, complete genomemembrane protein5e-1478.6
NC_008044:136844:162286162286163173888Silicibacter sp. TM1040, complete genomeprotein of unknown function DUF6, transmembrane1e-1377
NC_015496:1857900:187766818776681878498831Krokinobacter diaphorus 4H-3-7-5 chromosome, complete genomeprotein of unknown function DUF6 transmembrane4e-1375.5
NC_007775:1002934:100433210043321005240909Synechococcus sp. JA-3-3Ab, complete genomehypothetical protein1e-1273.9
NC_015458:3390674:341058934105893411515927Pusillimonas sp. T7-7 chromosome, complete genomeintegral membrane protein2e-1273.2
NC_016646:275818:279825279825280715891Pseudovibrio sp. FO-BEG1 plasmid unnamed, complete sequenceintegral membrane protein3e-1272.4
NC_004460:973738:978362978362979276915Vibrio vulnificus CMCP6 chromosome II, complete sequencePermease of the drug/metabolite transporter (DMT) superfamily3e-1169.3
NC_015425:2528549:256968625696862570534849Clostridium botulinum BKT015925 chromosome, complete genometransporter1e-0964.3
NC_007493:1672163:170872817087281709615888Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequencepossible transporter, DMT superfamily1e-0963.9
NC_020911:2998000:304012930401293040896768Octadecabacter antarcticus 307, complete genome1e-0963.5
NC_016585:1004000:100943410094341010330897Azospirillum lipoferum 4B plasmid AZO_p1, complete sequencehypothetical protein2e-0860.1
NC_014259:2948335:294833529483352949231897Acinetobacter sp. DR1 chromosome, complete genomehypothetical protein2e-0859.7
NC_014310:94645:111981111981112877897Ralstonia solanacearum PSI07 megaplasmid, complete sequences-adenosylmethionine uptake transporter4e-0858.9
NC_003296:140889:154403154403155353951Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completePROBABLE TRANSMEMBRANE PROTEIN1e-0757
NC_008146:861319:942390942390943271882Mycobacterium sp. MCS, complete genomeprotein of unknown function DUF6, transmembrane4e-0755.5
NC_008705:868623:948197948197949078882Mycobacterium sp. KMS, complete genomeprotein of unknown function DUF6, transmembrane4e-0755.5