Pre_GI: BLASTN Hits

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Query: NC_009708:372422 Yersinia pseudotuberculosis IP 31758 chromosome, complete genome

Start: 372422, End: 396100, Length: 23679

Host Lineage: Yersinia pseudotuberculosis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is serotype 1b and was isolated in 1966 from the stools of a patient presenting with scarlet-like fever in the Primorski region of the former USSR. Environmental bacterium that causes gastrointestinal disease. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. This organism was first isolated in 1883 by Malassez and Vignal and is termed pseudotuberculosis since it causes lesions in the lung that are similar to those observed during tuberculosis infection. It is ubiquitous in the environment and is a food and waterborne pathogen that affects animals as well as humans by causing gastroenteritis like Yersinia enterocolitica.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_010634:42349324234932425567620745Yersinia pseudotuberculosis PB1/+, complete genome017520BLASTN svgBLASTP svg
NC_004088:26654326654328592319381Yersinia pestis KIM, complete genome012340BLASTN svgBLASTP svg
NC_005810:44691564469156448873019575Yersinia pestis biovar Microtus str. 91001, complete genome012340BLASTN svgBLASTP svg
NC_008149:40533634053363407274419382Yersinia pestis Nepal516, complete genome012340BLASTN svgBLASTP svg
NC_003143:40068844006884402857921696Yersinia pestis CO92, complete genome017460BLASTN svgBLASTP svg
NC_006155:43028264302826432457921754Yersinia pseudotuberculosis IP 32953, complete genome017510BLASTN svgBLASTP svg
NC_010465:42909542909545249323399Yersinia pseudotuberculosis YPIII, complete genome017520BLASTN svgBLASTP svg
CP002185:234719*23471925468519967Escherichia coli W, complete genome8e-87329BLASTN svgBLASTP svg
NC_005126:34965834965840029550638Photorhabdus luminescens subsp. laumondii TTO1, complete genome4e-73283BLASTN svgBLASTP svg
NC_012962:10681021068102112169753596Photorhabdus asymbiotica, complete genome1e-70276BLASTN svgBLASTP svg
NC_013421:11435001143500116948625987Pectobacterium wasabiae WPP163, complete genome1e-67266BLASTN svgBLASTP svg
NC_014228:33538963353896338544531550Xenorhabdus nematophila ATCC 19061, complete genome1e-60242BLASTN svgBLASTP svg
NC_014228:43313274331327435436923043Xenorhabdus nematophila ATCC 19061, complete genome5e-60240BLASTN svgBLASTP svg
NC_014228:34421593442159346772325565Xenorhabdus nematophila ATCC 19061, complete genome3e-58234BLASTN svgBLASTP svg
NC_012962:29397629397631522521250Photorhabdus asymbiotica, complete genome3e-58234BLASTN svgBLASTP svg
NC_008570:1986466*1986466201051824053Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome7e-41176BLASTN svgBLASTP svg
NC_014228:1336466*1336466135833321868Xenorhabdus nematophila ATCC 19061, complete genome1e-39172BLASTN svgBLASTP svg
NC_014228:28835002883500292066537166Xenorhabdus nematophila ATCC 19061, complete genome1e-39172BLASTN svgBLASTP svg
NC_013592:14245601424560145021625657Dickeya dadantii Ech586, complete genome4e-39170BLASTN svgBLASTP svg
NC_015968:4117835*4117835416711149277Enterobacter asburiae LF7a chromosome, complete genome9e-25123BLASTN svgBLASTP svg
NC_008570:2014151*2014151204014925999Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_014323:4619344*4619344465241733074Herbaspirillum seropedicae SmR1 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_014500:89413689413693546441329Dickeya dadantii 3937 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_007005:58822055882205592100338799Pseudomonas syringae pv. syringae B728a, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_005773:16757931675793169861222820Pseudomonas syringae pv. phaseolicola 1448A, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_003143:1059580*1059580109467535096Yersinia pestis CO92, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_003143:16300001630000167609946100Yersinia pestis CO92, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_004088:29663312966331300002833698Yersinia pestis KIM, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_004088:3689000*3689000372277733778Yersinia pestis KIM, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_005810:14677721467772150509937328Yersinia pestis biovar Microtus str. 91001, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_005810:39172543917254395265235399Yersinia pestis biovar Microtus str. 91001, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_008149:28023922802392285367651285Yersinia pestis Nepal516, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_010159:31206423120642314771827077Yersinia pestis Angola, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_010159:17246917246919591323445Yersinia pestis Angola, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_008150:84472784472789009945373Yersinia pestis Antiqua, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_008150:31790331790335159933697Yersinia pestis Antiqua, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_008149:3556999*3556999359064933651Yersinia pestis Nepal516, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_012912:2901021*2901021292518824168Dickeya zeae Ech1591, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_012912:1701231*1701231174963148401Dickeya zeae Ech1591, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_007963:2555012*2555012257573920728Chromohalobacter salexigens DSM 3043, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013421:2613137*2613137263682223686Pectobacterium wasabiae WPP163, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_014500:3097362*3097362318793090569Dickeya dadantii 3937 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg