Pre_GI: BLASTN Hits

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Query: NC_009664:4347718 Kineococcus radiotolerans SRS30216, complete genome

Start: 4347718, End: 4374383, Length: 26666

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_009664:4423829*44238294686013262185Kineococcus radiotolerans SRS30216, complete genome0741BLASTN svgBLASTP svg
NC_009664:4696961*4696961475841661456Kineococcus radiotolerans SRS30216, complete genome2e-41178BLASTN svgBLASTP svg
NC_014318:1537732*1537732156155323822Amycolatopsis mediterranei U32 chromosome, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_013131:7530000*7530000755241822419Catenulispora acidiphila DSM 44928, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_013510:74704274704277346526424Thermomonospora curvata DSM 43183, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_003888:40312994031299405409922801Streptomyces coelicolor A3(2), complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014318:3947845*3947845397099423150Amycolatopsis mediterranei U32 chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_014623:86480008648000867083222833Stigmatella aurantiaca DW4/3-1 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg