Query: NC_009664:3969609 Kineococcus radiotolerans SRS30216, complete genome
Start: 3969609, End: 3989950, Length: 20342
Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria
General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
---|
NC_015671:1950081 | 1950081 | 1972276 | 22196 | Cellvibrio gilvus ATCC 13127 chromosome, complete genome | 4e-128 | 466 | BLASTN svg | BLASTP svg |
NC_013521:1976331 | 1976331 | 1997532 | 21202 | Sanguibacter keddieii DSM 10542, complete genome | 2e-127 | 464 | BLASTN svg | BLASTP svg |
NC_012803:1373500* | 1373500 | 1394069 | 20570 | Micrococcus luteus NCTC 2665, complete genome | 2e-77 | 297 | BLASTN svg | BLASTP svg |
NC_014210:3671495* | 3671495 | 3693120 | 21626 | Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome, | 3e-64 | 254 | BLASTN svg | BLASTP svg |
NC_005125:2811986 | 2811986 | 2855352 | 43367 | Gloeobacter violaceus PCC 7421, complete genome | 1e-20 | 109 | BLASTN svg | BLASTP svg |
NC_014355:3435343 | 3435343 | 3461466 | 26124 | Candidatus Nitrospira defluvii, complete genome | 5e-20 | 107 | BLASTN svg | BLASTP svg |
NC_008789:350650* | 350650 | 394174 | 43525 | Halorhodospira halophila SL1, complete genome | 5e-20 | 107 | BLASTN svg | BLASTP svg |
NC_014752:23601* | 23601 | 43436 | 19836 | Neisseria lactamica ST-640, complete genome | 2e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_010551:1462827* | 1462827 | 1484166 | 21340 | Burkholderia ambifaria MC40-6 chromosome 1, complete sequence | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_015711:4067905* | 4067905 | 4106599 | 38695 | Myxococcus fulvus HW-1 chromosome, complete genome | 6e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_010337:524605* | 524605 | 544681 | 20077 | Heliobacterium modesticaldum Ice1, complete genome | 6e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_009952:1680682* | 1680682 | 1718564 | 37883 | Dinoroseobacter shibae DFL 12, complete genome | 6e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_015711:8909256 | 8909256 | 8929673 | 20418 | Myxococcus fulvus HW-1 chromosome, complete genome | 9e-06 | 60 | BLASTN svg | BLASTP svg |
NC_011071:3544450 | 3544450 | 3569099 | 24650 | Stenotrophomonas maltophilia R551-3, complete genome | 9e-06 | 60 | BLASTN svg | BLASTP svg |
NC_008095:7172047* | 7172047 | 7199532 | 27486 | Myxococcus xanthus DK 1622, complete genome | 9e-06 | 60 | BLASTN svg | BLASTP svg |