Pre_GI: BLASTN Hits

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Query: NC_009664:3245210 Kineococcus radiotolerans SRS30216, complete genome

Start: 3245210, End: 3266817, Length: 21608

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_009664:1195630*1195630122637430745Kineococcus radiotolerans SRS30216, complete genome5e-29137BLASTN svgBLASTP svg
NC_018750:79136007913600793264719048Streptomyces venezuelae ATCC 10712, complete genome5e-26127BLASTN svgBLASTP svg
NC_007333:430000*43000045449524496Thermobifida fusca YX, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_018750:3249756*3249756327318823433Streptomyces venezuelae ATCC 10712, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_013169:24238632423863245464230780Kytococcus sedentarius DSM 20547, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_002516:24363042436304246509928796Pseudomonas aeruginosa PAO1, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_013947:5431741*5431741545589424154Stackebrandtia nassauensis DSM 44728 chromosome, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_003155:44415594441559446530823750Streptomyces avermitilis MA-4680, complete genome3e-0661.9BLASTN svgBLASTP svg