Pre_GI: BLASTN Hits

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Query: NC_009480:99640 Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete

Start: 99640, End: 133801, Length: 34162

Host Lineage: Clavibacter michiganensis; Clavibacter; Microbacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Phytopathogen that causes bacterial wilt and canker of tomato (Lycopersicon esculentum). This is considered to be the most important bacterial disease of tomato causing substantial economic losses worldwide. Bacteria enter the plant by wounds on root or stem and then find their way into the xylem allowing a massive systemic colonization. The first stage of the disease is characterized by unilateral wilting of leaves. Wilting then spreads to all leaves, canker lesions develop on the stem and the plant dies. If infection occurs at a late stage of plant development, plants can survive and yield fruit that may have spots, so called bird's eyes. Often the seeds will be infected and this has been the major source for outbreaks of Clavibacter michiganensis subsp. michiganensis infections in agriculture. Members of the Clavibacter genus are known to produce antimicrobial compounds.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_011886:40466140466142708122421Arthrobacter chlorophenolicus A6, complete genome7e-1177.8BLASTN svgBLASTP svg
NC_014817:142976*14297616583322858Asticcacaulis excentricus CB 48 chromosome 2, complete sequence7e-1797.6BLASTN svgBLASTP svg
NC_009479:34001340015621322213Clavibacter michiganensis subsp. michiganensis NCPPB 382 plasmid2e-38168BLASTN svgBLASTP svg
NC_010407:31326833132683315489022208Clavibacter michiganensis subsp. sepedonicus chromosome, complete1e-40176BLASTN svgBLASTP svg
NC_010407:17752271775227180054825322Clavibacter michiganensis subsp. sepedonicus chromosome, complete2e-1179.8BLASTN svgBLASTP svg
NC_010407:31744703174470319754523076Clavibacter michiganensis subsp. sepedonicus chromosome, complete1e-0973.8BLASTN svgBLASTP svg
NC_015588:24682072468207249482226616Isoptericola variabilis 225 chromosome, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_009664:4423829*44238294686013262185Kineococcus radiotolerans SRS30216, complete genome1e-1593.7BLASTN svgBLASTP svg
NC_006087:20080002008000202809920100Leifsonia xyli subsp. xyli str. CTCB07, complete genome2e-35159BLASTN svgBLASTP svg
NC_013159:50292850292853082127894Saccharomonospora viridis DSM 43017, complete genome2e-45192BLASTN svgBLASTP svg
NC_019673:8581000*8581000860834127342Saccharothrix espanaensis DSM 44229 complete genome3e-56228BLASTN svgBLASTP svg
NC_013521:94049594049596409923605Sanguibacter keddieii DSM 10542, complete genome1e-40176BLASTN svgBLASTP svg
NC_007333:174389017438901873648129759Thermobifida fusca YX, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_009720:5046861*5046861507080323943Xanthobacter autotrophicus Py2, complete genome6e-33151BLASTN svgBLASTP svg