Pre_GI: BLASTN Hits

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Query: NC_009439:794498 Pseudomonas mendocina ymp, complete genome

Start: 794498, End: 814737, Length: 20240

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_009439:860571*86057188549124921Pseudomonas mendocina ymp, complete genome1e-29139BLASTN svgBLASTP svg
NC_013851:31669693166969319361626648Allochromatium vinosum DSM 180 chromosome, complete genome5e-26127BLASTN svgBLASTP svg
NC_007005:10362431036243106363927397Pseudomonas syringae pv. syringae B728a, complete genome2e-25125BLASTN svgBLASTP svg
NC_002939:1480474*1480474150560725134Geobacter sulfurreducens PCA, complete genome8e-25123BLASTN svgBLASTP svg
NC_020209:2119845*2119845214457424730Pseudomonas poae RE*1-1-14, complete genome3e-24121BLASTN svgBLASTP svg
NC_015740:2692023*2692023271734525323Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete2e-22115BLASTN svgBLASTP svg
NC_009092:15043631504363158010375741Shewanella loihica PV-4, complete genome2e-22115BLASTN svgBLASTP svg
NC_009092:43376174337617437380536189Shewanella loihica PV-4, complete genome7e-22113BLASTN svgBLASTP svg
NC_015410:96952696952699007820553Pseudomonas mendocina NK-01 chromosome, complete genome7e-22113BLASTN svgBLASTP svg
NC_011901:13983761398376142787629501Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, complete3e-21111BLASTN svgBLASTP svg
NC_008570:1852286*1852286187535523070Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome3e-21111BLASTN svgBLASTP svg
NC_012808:39729833972983399542222440Methylobacterium extorquens AM1, complete genome4e-20107BLASTN svgBLASTP svg
NC_008752:415599*41559944209126493Acidovorax avenae subsp. citrulli AAC00-1, complete genome2e-19105BLASTN svgBLASTP svg
NC_004578:11537381153738117268818951Pseudomonas syringae pv. tomato str. DC3000, complete genome3e-18101BLASTN svgBLASTP svg
NC_005085:24623246234912724505Chromobacterium violaceum ATCC 12472, complete genome3e-18101BLASTN svgBLASTP svg
NC_010505:21038872103887213081426928Methylobacterium radiotolerans JCM 2831, complete genome3e-18101BLASTN svgBLASTP svg
NC_011770:3735162*3735162376383628675Pseudomonas aeruginosa LESB58, complete genome3e-18101BLASTN svgBLASTP svg
NC_010424:69718769718777730380117Candidatus Desulforudis audaxviator MP104C, complete genome4e-1797.6BLASTN svgBLASTP svg
NC_007005:40623114062311408347221162Pseudomonas syringae pv. syringae B728a, complete genome4e-1797.6BLASTN svgBLASTP svg
NC_005773:38514333851433386927817846Pseudomonas syringae pv. phaseolicola 1448A, complete genome4e-1797.6BLASTN svgBLASTP svg
NC_004578:21859072185907220851022604Pseudomonas syringae pv. tomato str. DC3000, complete genome4e-1797.6BLASTN svgBLASTP svg
NC_008463:2654014*2654014267605522042Pseudomonas aeruginosa UCBPP-PA14, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_012660:3689223*3689223371658727365Pseudomonas fluorescens SBW25 chromosome, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_014541:29785002978500299617417675Ferrimonas balearica DSM 9799 chromosome, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_015424:4251369*4251369427627324905Aeromonas veronii B565 chromosome, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_004129:57814135781413580497523563Pseudomonas fluorescens Pf-5, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_005296:5238882*5238882526489126010Rhodopseudomonas palustris CGA009, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_007519:27730002773000280551732518Desulfovibrio alaskensis G20 chromosome, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_008027:29090002909000292988020881Pseudomonas entomophila L48, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_008463:3503576*3503576352773524160Pseudomonas aeruginosa UCBPP-PA14, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_013522:1538994*1538994156384524852Thermanaerovibrio acidaminovorans DSM 6589, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_007492:33328393332839335417921341Pseudomonas fluorescens PfO-1, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_011757:5742290*5742290578349941210Methylobacterium chloromethanicum CM4, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_013093:1909305*1909305193716827864Actinosynnema mirum DSM 43827, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_007492:20357612035761205955323793Pseudomonas fluorescens PfO-1, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_007519:3240864*3240864326641325550Desulfovibrio alaskensis G20 chromosome, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_007645:35811143581114360707925966Hahella chejuensis KCTC 2396, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_007645:38704663870466392303252567Hahella chejuensis KCTC 2396, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_007778:1053462*1053462107959926138Rhodopseudomonas palustris HaA2, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_008570:3083850*3083850310907525226Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_009434:3611738*36117383748875137138Pseudomonas stutzeri A1501, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_020209:45495634549563457659927037Pseudomonas poae RE*1-1-14, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_007005:2686551*2686551274062754077Pseudomonas syringae pv. syringae B728a, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_012796:2683711*2683711270614022430Desulfovibrio magneticus RS-1, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_015733:26583372658337270338145045Pseudomonas putida S16 chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_012660:5571500*5571500559959928100Pseudomonas fluorescens SBW25 chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_012660:52423925242392526802925638Pseudomonas fluorescens SBW25 chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_011004:5520771*5520771554678126011Rhodopseudomonas palustris TIE-1, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_008570:23650023650025959923100Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_002939:80579480579482823022437Geobacter sulfurreducens PCA, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_009937:412302*41230243181319512Azorhizobium caulinodans ORS 571, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_011757:748223*74822379542247200Methylobacterium chloromethanicum CM4, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_012660:1579204*1579204162109241889Pseudomonas fluorescens SBW25 chromosome, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_015410:22588002258800228509926300Pseudomonas mendocina NK-01 chromosome, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_011769:2294387*2294387231565121265Desulfovibrio vulgaris str. 'Miyazaki F', complete genome3e-1281.8BLASTN svgBLASTP svg
NC_010501:25118872511887254627834392Pseudomonas putida W619, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_009664:4423829*44238294686013262185Kineococcus radiotolerans SRS30216, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_005085:31165143116514313924422731Chromobacterium violaceum ATCC 12472, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_008435:39151103915110393809922990Rhodopseudomonas palustris BisA53, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_009937:5033152*5033152505948226331Azorhizobium caulinodans ORS 571, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_016002:25911892591189261459923411Pseudogulbenkiania sp. NH8B, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_015379:3736500*3736500376722330724Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,2e-1075.8BLASTN svgBLASTP svg
NC_015186:1504275*1504275153079626522Acidiphilium multivorum AIU301, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_011883:2680380*2680380271559935220Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,2e-1075.8BLASTN svgBLASTP svg
NC_009464:25230922523092255904635955Uncultured methanogenic archaeon RC-I, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_007005:31998203199820323980239983Pseudomonas syringae pv. syringae B728a, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_011832:2760000*2760000278338023381Candidatus Methanosphaerula palustris E1-9c, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_014006:12045001204500122366719168Sphingobium japonicum UT26S chromosome 1, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_014844:51155251155253463823087Desulfovibrio aespoeensis Aspo-2 chromosome, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_004578:38173303817330384200124672Pseudomonas syringae pv. tomato str. DC3000, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_006177:10604281060428108247522048Symbiobacterium thermophilum IAM 14863, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_007493:1929000*1929000195414225143Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence2e-0971.9BLASTN svgBLASTP svg
NC_008702:2378890*2378890240382824939Azoarcus sp. BH72, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_009049:11256811125681116136535685Rhodobacter sphaeroides ATCC 17029 chromosome 1, complete sequence2e-0971.9BLASTN svgBLASTP svg
NC_009049:1934398*1934398196979735400Rhodobacter sphaeroides ATCC 17029 chromosome 1, complete sequence2e-0971.9BLASTN svgBLASTP svg
NC_010514:600060002855022551Methylobacterium radiotolerans JCM 2831 plasmid pMRAD03, complete2e-0971.9BLASTN svgBLASTP svg
NC_010814:90319990319992459921401Geobacter lovleyi SZ, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_005085:41572574157257418052123265Chromobacterium violaceum ATCC 12472, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_005773:32535753253575328174728173Pseudomonas syringae pv. phaseolicola 1448A, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_008751:29882352988235301490126667Desulfovibrio vulgaris subsp. vulgaris DP4, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014844:1270618*1270618132486354246Desulfovibrio aespoeensis Aspo-2 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_007626:40380544038054406859930546Magnetospirillum magneticum AMB-1, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_008435:2658986*2658986275828699301Rhodopseudomonas palustris BisA53, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_008570:1094442*1094442111732922888Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_012660:33203303320330335044730118Pseudomonas fluorescens SBW25 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_012808:594000*59400061960225603Methylobacterium extorquens AM1, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_013093:31578973157897318209324197Actinosynnema mirum DSM 43827, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_013858:47729847729850922131924Azospirillum sp. B510 plasmid pAB510d, complete sequence4e-0867.9BLASTN svgBLASTP svg
NC_015410:2505168*2505168253404528878Pseudomonas mendocina NK-01 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_015573:64980064980067054820749Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_016002:1326500*1326500135490028401Pseudogulbenkiania sp. NH8B, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_008782:3110744*3110744313966428921Acidovorax sp. JS42, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_011146:33768163376816340354026725Geobacter bemidjiensis Bem, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_012559:13019881301988132559923612Laribacter hongkongensis HLHK9, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_012808:1122341*1122341115920936869Methylobacterium extorquens AM1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013855:670285*67028569312522841Azospirillum sp. B510 plasmid pAB510a, complete sequence2e-0765.9BLASTN svgBLASTP svg
NC_013946:879199*87919990227423076Meiothermus ruber DSM 1279 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015424:35207833520783357390853126Aeromonas veronii B565 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008700:1115436*1115436114339927964Shewanella amazonensis SB2B, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_009092:1047500*1047500107272925230Shewanella loihica PV-4, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_009664:570768*57076859843127664Kineococcus radiotolerans SRS30216, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_011757:51027325102732513806935338Methylobacterium chloromethanicum CM4, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_013174:373726*37372639441720692Jonesia denitrificans DSM 20603, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_014831:22247332224733225059925867Thermaerobacter marianensis DSM 12885 chromosome, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_020209:47504*4750412622978726Pseudomonas poae RE*1-1-14, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_002937:19157871915787193430218516Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete2e-0661.9BLASTN svgBLASTP svg
NC_008577:41833614183361420632622966Shewanella sp. ANA-3 chromosome 1, complete sequence2e-0661.9BLASTN svgBLASTP svg
NC_009348:2631759*2631759265138819630Aeromonas salmonicida subsp. salmonicida A449, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_008609:29334682933468295611322646Pelobacter propionicus DSM 2379, complete genome9e-0660BLASTN svgBLASTP svg
NC_009832:17191491719149175798638838Serratia proteamaculans 568, complete genome9e-0660BLASTN svgBLASTP svg
NC_009943:748788*74878877355124764Candidatus Desulfococcus oleovorans Hxd3, complete genome9e-0660BLASTN svgBLASTP svg
NC_010725:1419272*1419272148003860767Methylobacterium populi BJ001, complete genome9e-0660BLASTN svgBLASTP svg
NC_013959:2449315*2449315247282523511Sideroxydans lithotrophicus ES-1 chromosome, complete genome9e-0660BLASTN svgBLASTP svg
NC_014844:903877*90387792643122555Desulfovibrio aespoeensis Aspo-2 chromosome, complete genome9e-0660BLASTN svgBLASTP svg
NC_014973:3151701*3151701317705425354Geobacter sp. M18 chromosome, complete genome9e-0660BLASTN svgBLASTP svg
NC_020209:19865031986503202425537753Pseudomonas poae RE*1-1-14, complete genome9e-0660BLASTN svgBLASTP svg
NC_007963:2555012*2555012257573920728Chromohalobacter salexigens DSM 3043, complete genome9e-0660BLASTN svgBLASTP svg