Pre_GI: BLASTN Hits

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Query: NC_009439:4913767 Pseudomonas mendocina ymp, complete genome

Start: 4913767, End: 4936099, Length: 22333

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_009439:44289044289048900846119Pseudomonas mendocina ymp, complete genome02825BLASTN svgBLASTP svg
NC_009439:12978511297851133481436964Pseudomonas mendocina ymp, complete genome02823BLASTN svgBLASTP svg
NC_009439:2038303*2038303206823929937Pseudomonas mendocina ymp, complete genome02819BLASTN svgBLASTP svg
NC_009439:860571*86057188549124921Pseudomonas mendocina ymp, complete genome02813BLASTN svgBLASTP svg
NC_009439:37702823770282380177231491Pseudomonas mendocina ymp, complete genome02813BLASTN svgBLASTP svg
NC_009439:3394174*3394174341925525082Pseudomonas mendocina ymp, complete genome02813BLASTN svgBLASTP svg
NC_009439:10117410117412533624163Pseudomonas mendocina ymp, complete genome0763BLASTN svgBLASTP svg
NC_012560:68251682518837920129Azotobacter vinelandii DJ, complete genome5e-168599BLASTN svgBLASTP svg
NC_021150:68251682518837920129Azotobacter vinelandii CA6, complete genome5e-168599BLASTN svgBLASTP svg
NC_009439:91853491853494240823875Pseudomonas mendocina ymp, complete genome9e-142511BLASTN svgBLASTP svg
NC_015740:11063311063313313122499Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete7e-124452BLASTN svgBLASTP svg
NC_008027:896000*89600091964923650Pseudomonas entomophila L48, complete genome8e-99369BLASTN svgBLASTP svg
NC_008027:55850755850758141922913Pseudomonas entomophila L48, complete genome1e-94355BLASTN svgBLASTP svg
NC_007492:29940362994036302311329078Pseudomonas fluorescens PfO-1, complete genome5e-91343BLASTN svgBLASTP svg
NC_008463:282565*28256532073638172Pseudomonas aeruginosa UCBPP-PA14, complete genome2e-84321BLASTN svgBLASTP svg
NC_008027:4889662*4889662491964529984Pseudomonas entomophila L48, complete genome2e-84321BLASTN svgBLASTP svg
NC_004578:61386696138669616309624428Pseudomonas syringae pv. tomato str. DC3000, complete genome2e-81311BLASTN svgBLASTP svg
NC_007492:23107932310793233159920807Pseudomonas fluorescens PfO-1, complete genome4e-76293BLASTN svgBLASTP svg
NC_008027:38443553844355388629641942Pseudomonas entomophila L48, complete genome9e-68266BLASTN svgBLASTP svg
NC_008027:55764585576458559851822061Pseudomonas entomophila L48, complete genome2e-65258BLASTN svgBLASTP svg
NC_015556:13043713043716194631510Pseudomonas fulva 12-X chromosome, complete genome3e-52214BLASTN svgBLASTP svg
NC_004578:49400004940000496327423275Pseudomonas syringae pv. tomato str. DC3000, complete genome2e-47198BLASTN svgBLASTP svg
NC_014532:1307983*1307983133509927117Halomonas elongata DSM 2581, complete genome1e-39172BLASTN svgBLASTP svg
NC_004578:27974932797493281782820336Pseudomonas syringae pv. tomato str. DC3000, complete genome4e-33151BLASTN svgBLASTP svg
NC_016002:2825017*2825017284854323527Pseudogulbenkiania sp. NH8B, complete genome9e-31143BLASTN svgBLASTP svg
NC_003295:659837*65983768202922193Ralstonia solanacearum GMI1000, complete genome1e-20109BLASTN svgBLASTP svg
NC_007508:47657514765751478898723237Xanthomonas campestris pv. vesicatoria str. 85-10, complete genome5e-20107BLASTN svgBLASTP svg
NC_008752:10259801025980106353637557Acidovorax avenae subsp. citrulli AAC00-1, complete genome8e-19103BLASTN svgBLASTP svg
NC_013855:1268424*1268424129242324000Azospirillum sp. B510 plasmid pAB510a, complete sequence3e-18101BLASTN svgBLASTP svg
NC_021150:16273471627347165194824602Azotobacter vinelandii CA6, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_018524:57484215748421577627827858Nocardiopsis alba ATCC BAA-2165 chromosome, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_012560:16273341627334164585618523Azotobacter vinelandii DJ, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_008027:4280000*4280000430482424825Pseudomonas entomophila L48, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_010515:21116912111691217367661986Burkholderia cenocepacia MC0-3 chromosome 2, complete sequence1e-1489.7BLASTN svgBLASTP svg
NC_008543:22206982220698226060739910Burkholderia cenocepacia HI2424 chromosome 2, complete sequence1e-1489.7BLASTN svgBLASTP svg
NC_008061:19028719028724895258666Burkholderia cenocepacia AU 1054 chromosome 2, complete sequence1e-1489.7BLASTN svgBLASTP svg
NC_002947:2809591*2809591283264923059Pseudomonas putida KT2440, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_007925:4060635*4060635408822427590Rhodopseudomonas palustris BisB18, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_018868:26158222615822264376527944Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_009668:1591290*1591290161420122912Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequence7e-1383.8BLASTN svgBLASTP svg
NC_010172:57304657304660029627251Methylobacterium extorquens PA1, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_015563:11294691129469116017830710Delftia sp. Cs1-4 chromosome, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_008595:11766581176658119686720210Mycobacterium avium 104, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_012522:75960397596039763616240124Rhodococcus opacus B4, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_007677:71532715329136419833Salinibacter ruber DSM 13855, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_002945:16217651621765164826226498Mycobacterium bovis AF2122/97, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_007643:3799425*3799425383775538331Rhodospirillum rubrum ATCC 11170, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_007952:14160001416000143886822869Burkholderia xenovorans LB400 chromosome 2, complete sequence1e-0869.9BLASTN svgBLASTP svg
NC_009565:16297801629780165615326374Mycobacterium tuberculosis F11, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015848:16475231647523167029122769Mycobacterium canettii CIPT 140010059, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015953:1581542*1581542160650824967Streptomyces sp. SirexAA-E chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_014550:33778343377834343359955766Arthrobacter arilaitensis Re117, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_002947:46045824604582462867624095Pseudomonas putida KT2440, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_010725:750911*75091177963428724Methylobacterium populi BJ001, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013205:2610956*2610956266117350218Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,2e-0765.9BLASTN svgBLASTP svg
NC_013722:2150882*2150882218450433623Xanthomonas albilineans, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015957:1070500*1070500110058130082Streptomyces violaceusniger Tu 4113 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008061:27736702773670279999926330Burkholderia cenocepacia AU 1054 chromosome 2, complete sequence7e-0763.9BLASTN svgBLASTP svg
NC_008543:24740022474002249449920498Burkholderia cenocepacia HI2424 chromosome 2, complete sequence7e-0763.9BLASTN svgBLASTP svg
NC_010515:19009671900967192454423578Burkholderia cenocepacia MC0-3 chromosome 2, complete sequence7e-0763.9BLASTN svgBLASTP svg
NC_013037:6209424*6209424625316043737Dyadobacter fermentans DSM 18053, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_014831:78601178601180816322153Thermaerobacter marianensis DSM 12885 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_015957:8103472*8103472812858025109Streptomyces violaceusniger Tu 4113 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_014532:35960973596097363859942503Halomonas elongata DSM 2581, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_009720:46407846407848874724670Xanthobacter autotrophicus Py2, complete genome3e-0661.9BLASTN svgBLASTP svg