Pre_GI: BLASTN Hits

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Query: NC_009439:3535152 Pseudomonas mendocina ymp, complete genome

Start: 3535152, End: 3555614, Length: 20463

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_021150:19652641965264198887523612Azotobacter vinelandii CA6, complete genome0942BLASTN svgBLASTP svg
NC_012560:19652511965251198886223612Azotobacter vinelandii DJ, complete genome0942BLASTN svgBLASTP svg
NC_007492:27710212771021280204831028Pseudomonas fluorescens PfO-1, complete genome7e-161575BLASTN svgBLASTP svg
NC_010501:4787963*4787963480728619324Pseudomonas putida W619, complete genome4e-119436BLASTN svgBLASTP svg
NC_009648:14876921487692151904531354Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome2e-19105BLASTN svgBLASTP svg
NC_007760:53582553582555927723453Anaeromyxobacter dehalogenans 2CP-C, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_015410:37010003701000372390022901Pseudomonas mendocina NK-01 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_009439:4404942*4404942442988324942Pseudomonas mendocina ymp, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_008825:31611463161146318336522220Methylibium petroleiphilum PM1, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_010943:1332243*1332243137790845666Stenotrophomonas maltophilia K279a, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_016002:2825017*2825017284854323527Pseudogulbenkiania sp. NH8B, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_009439:1174432*1174432119973625305Pseudomonas mendocina ymp, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_015740:15943761594376161634721972Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete1e-0560BLASTN svgBLASTP svg
NC_000913:45282784528278455238424107Escherichia coli K12, complete genome1e-0560BLASTN svgBLASTP svg
NC_004337:4374500*4374500439909924600Shigella flexneri 2a str. 301, complete genome1e-0560BLASTN svgBLASTP svg
NC_004431:51233255123325514909025766Escherichia coli CFT073, complete genome1e-0560BLASTN svgBLASTP svg
NC_004741:4364235*4364235438964325409Shigella flexneri 2a str. 2457T, complete genome1e-0560BLASTN svgBLASTP svg
NC_007613:44030704403070442929526226Shigella boydii Sb227, complete genome1e-0560BLASTN svgBLASTP svg
NC_011750:49780004978000500028022281Escherichia coli IAI39 chromosome, complete genome1e-0560BLASTN svgBLASTP svg
NC_012808:420334*42033444610925776Methylobacterium extorquens AM1, complete genome1e-0560BLASTN svgBLASTP svg
NC_014532:1481787*1481787151013928353Halomonas elongata DSM 2581, complete genome1e-0560BLASTN svgBLASTP svg
AC_000091:45349354534935455904124107Escherichia coli W3110 DNA, complete genome1e-0560BLASTN svgBLASTP svg