Pre_GI: BLASTP Hits

Some Help

Query: NC_009439:794498:794498 Pseudomonas mendocina ymp, complete genome

Start: 794498, End: 796285, Length: 1788

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015740:2692023:2710392271039227121581767Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completethiol:disulfide interchange protein1e-154546
NC_009434:3611738:3659254365925436610171764Pseudomonas stutzeri A1501, complete genomethiol:disulfide interchange protein precursor1e-153543
NC_015761:4188250:4215962421596242176651704Salmonella bongori NCTC 12419, complete genomethiol:disulfide interchange protein DsbD1e-61238
NC_014618:4312295:4315600431560043173181719Enterobacter cloacae SCF1 chromosome, complete genomeProtein-disulfide reductase3e-61236
NC_011283:5170683:5195534519553451973301797Klebsiella pneumoniae 342 chromosome, complete genomethiol:disulfide interchange protein2e-58227
NC_013850:4993307:5017594501759450193901797Klebsiella variicola At-22 chromosome, complete genomecytochrome c biogenesis protein transmembrane region2e-58227
NC_004431:4955658:4972379497237949740761698Escherichia coli CFT073, complete genomethiol:disulfide interchange protein precursor3e-58226
NC_013956:455000:4671364671364688301695Pantoea ananatis LMG 20103 chromosome, complete genomeDsbD3e-58226
AP010958:5090696:5120677512067751223741698Escherichia coli O103:H2 str. 12009 DNA, complete genomefused thiol: disulfide interchange protein: activator of DsbC/conserved protein3e-58226
CU928145:4792703:4808917480891748106141698Escherichia coli 55989 chromosome, complete genomefused thiol:disulfide interchange protein: activator of DsbC ; conserved hypothetical protein3e-58226
NC_011748:4792703:4808917480891748106141698Escherichia coli 55989, complete genomethiol:disulfide interchange protein precursor3e-58226
NC_013353:5090696:5120677512067751223741698Escherichia coli O103:H2 str. 12009, complete genomefused thiol: disulfide interchange protein: activator of DsbC/hypothetical protein3e-58226
NC_015663:1902344:1927238192723819289621725Enterobacter aerogenes KCTC 2190 chromosome, complete genomethiol:disulfide interchange protein9e-58225
NC_012880:3982383:3984099398409939858111713Dickeya dadantii Ech703, complete genomecytochrome c biogenesis protein transmembrane region2e-55217
NC_015850:1947000:1952906195290619547711866Acidithiobacillus caldus SM-1 chromosome, complete genomecytochrome c-type biogenesis protein DsbD, protein-disulfide reductase1e-52208
NC_015850:548821:5611945611945630591866Acidithiobacillus caldus SM-1 chromosome, complete genomecytochrome c-type biogenesis protein DsbD, protein-disulfide reductase1e-52208
NC_009850:2169459:2186381218638121881381758Arcobacter butzleri RM4018, complete genomethiol:disulfide interchange protein DsbD7e-52205
NC_012808:1220378:1262514126251412642531740Methylobacterium extorquens AM1, complete genomeputative fused thiol:disulfide interchange protein precursor5e-48192
NC_002947:4805060:4808445480844548101601716Pseudomonas putida KT2440, complete genomethiol:disulfide interchange protein DsbD4e-47189
NC_015850:1060000:1066639106663910685551917Acidithiobacillus caldus SM-1 chromosome, complete genomecytochrome c-type biogenesis protein DsbD, protein-disulfide reductase5e-46186
NC_012988:670101:6868336868336886051773Methylobacterium extorquens DM4, complete genomefused thiol:disulfide interchange protein3e-44180
NC_011147:4297513:4312808431280843145111704Salmonella enterica subsp. enterica serovar Paratyphi A strthiol:disulfide interchange protein5e-44179
NC_003198:4513900:4543876454387645455791704Salmonella enterica subsp. enterica serovar Typhi str. CT18,thiol:disulfide interchange protein precursor7e-44179
NC_011205:4564645:4579895457989545815981704Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853thiol:disulfide interchange protein precursor3e-43177
NC_011294:4409137:4422676442267644243791704Salmonella enterica subsp. enterica serovar Enteritidis strthiol:disulfide interchange protein3e-43177
NC_016831:4367000:4380725438072543824281704Salmonella enterica subsp. enterica serovar Gallinarum/pullorumthiol:disulfide interchange protein DsbD3e-43177
NC_011274:4385039:4400580440058044022831704Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91thiol:disulfide interchange protein3e-43177
NC_010067:3204682:3204682320468232063851704Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-43177
NC_011080:4543000:4566791456679145684941704Salmonella enterica subsp. enterica serovar Newport str. SL254,thiol:disulfide interchange protein DsbD6e-43176
NC_003197:4551880:4567382456738245690851704Salmonella typhimurium LT2, complete genomethiol:disulfide interchange protein precursor6e-43176
NC_016810:4573172:4587963458796345896661704Salmonella enterica subsp. enterica serovar Typhimurium strthiol:disulfide interchange protein DsbD6e-43176
NC_016856:4563435:4580213458021345819161704Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sthiol:disulfide interchange protein6e-43176
NC_016857:4573173:4587964458796445896671704Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74thiol:disulfide interchange protein6e-43176
NC_016860:4649274:4664776466477646664791704Salmonella enterica subsp. enterica serovar Typhimurium strthiol:disulfide interchange protein6e-43176
NC_016863:4513106:4527819452781945295221704Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1thiol:disulfide interchange protein6e-43176
NC_017046:4571833:4586624458662445883271704Salmonella enterica subsp. enterica serovar Typhimurium str. 798thiol:disulfide interchange protein DsbD6e-43176
NC_004547:667988:6909186909186926511734Erwinia carotovora subsp. atroseptica SCRI1043, complete genomethiol:disulfide interchange protein precursor8e-43175
NC_009832:426993:4521354521354538201686Serratia proteamaculans 568, complete genomeProtein-disulfide reductase2e-42174
NC_012917:569856:5857255857255874761752Pectobacterium carotovorum subsp. carotovorum PC1, complete genomecytochrome c biogenesis protein transmembrane region2e-42174
NC_011745:4862218:4881993488199348836901698Escherichia coli ED1a chromosome, complete genomethiol:disulfide interchange protein4e-41169
NC_006155:456000:4763734763734781601788Yersinia pseudotuberculosis IP 32953, complete genomethiol:disulfide interchange protein precursor1e-40168
NC_017154:331921:3511873511873529741788Yersinia pestis D106004 chromosome, complete genomethiol:disulfide interchange protein1e-40168
NC_013961:3269368:3272548327254832742631716Erwinia amylovora, complete genomethiol:disulfide interchange protein DsbD1e-40168
NC_005126:4824500:4828928482892848306551728Photorhabdus luminescens subsp. laumondii TTO1, complete genomethiol:disulfide interchange protein precursor2e-40167
NC_006905:4486433:4502083450208345037861704Salmonella enterica subsp. enterica serovar Choleraesuis strthiol:disulfide interchange protein precursor3e-40166
NC_020211:379000:3981603981603998841725Serratia marcescens WW4, complete genomethiol:disulfide interchange protein3e-40166
NC_005810:515744:5358245358245376111788Yersinia pestis biovar Microtus str. 91001, complete genomethiol:disulfide interchange protein precursor1e-39165
NC_021066:3703725:3705420370542037072221803Raoultella ornithinolytica B6, complete genomethiol:disulfide interchange protein precursor8e-38159
NC_007712:532500:5468225468225485941773Sodalis glossinidius str. 'morsitans', complete genomethiol-disulfide interchange protein3e-37157
NC_013592:577831:5929225929225946701749Dickeya dadantii Ech586, complete genomecytochrome c biogenesis protein transmembrane region9e-37155
NC_012912:4012112:4013884401388440156021719Dickeya zeae Ech1591, complete genomecytochrome c biogenesis protein transmembrane region6e-36152
NC_014541:475350:5289695289695307381770Ferrimonas balearica DSM 9799 chromosome, complete genomecytochrome c biogenesis protein transmembrane region2e-33144
NC_015942:763500:7779567779567795061551Acidithiobacillus ferrivorans SS3 chromosome, complete genomecytochrome c biogenesis protein transmembrane region1e-30134
NC_010688:605018:6050186050186073242307Xanthomonas campestris pv. campestris, complete genomehypothetical protein3e-1997.4
NC_007086:626891:6268916268916291972307Xanthomonas campestris pv. campestris str. 8004, complete genomec-type cytochrome biogenesis protein3e-1997.4
NC_003902:624828:6248286248286271342307Xanthomonas campestris pv. campestris str. ATCC 33913, completec-type cytochrome biogenesis protein3e-1997.4
NC_010995:3197686:3217795321779532196121818Cellvibrio japonicus Ueda107, complete genomec-type cytochrome biogenesis protein7e-1685.9
NC_009138:1583988:160125616012561601759504Herminiimonas arsenicoxydans, complete genomeputative Thiol:disulfide interchange protein DsbD (partial)6e-1273.2